; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg04925 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg04925
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein PRD1
Genome locationCarg_Chr08:516070..519442
RNA-Seq ExpressionCarg04925
SyntenyCarg04925
Gene Ontology termsGO:0042138 - meiotic DNA double-strand break formation (biological process)
InterPro domainsIPR044968 - Protein PUTATIVE RECOMBINATION INITIATION DEFECT 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592895.1 Protein putative RECOMBINATION INITIATION DEFECT 1, partial [Cucurbita argyrosperma subsp. sororia]2.8e-66100Show/hide
Query:  MATFHRFAFTHRKEEVGTICLLCFSNLISDPFSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNF
        MATFHRFAFTHRKEEVGTICLLCFSNLISDPFSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNF
Subjt:  MATFHRFAFTHRKEEVGTICLLCFSNLISDPFSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNF

Query:  IAGVLDRLSYAVLAWSPRQVYMVPNVR
        IAGVLDRLSYAVLAWSPRQVYMVPNVR
Subjt:  IAGVLDRLSYAVLAWSPRQVYMVPNVR

KAG7025297.1 Protein PRD1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-123100Show/hide
Query:  MHLGAGTSSAKTHDIPKRKRINRIEKRWIFGHLAGEEENAIKSSPFARQNFEKPRHLSKRLPEVFFGEGNIQTPNQHRKNRIDPFFHDHASMATFHRFAF
        MHLGAGTSSAKTHDIPKRKRINRIEKRWIFGHLAGEEENAIKSSPFARQNFEKPRHLSKRLPEVFFGEGNIQTPNQHRKNRIDPFFHDHASMATFHRFAF
Subjt:  MHLGAGTSSAKTHDIPKRKRINRIEKRWIFGHLAGEEENAIKSSPFARQNFEKPRHLSKRLPEVFFGEGNIQTPNQHRKNRIDPFFHDHASMATFHRFAF

Query:  THRKEEVGTICLLCFSNLISDPFSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGVLDRLS
        THRKEEVGTICLLCFSNLISDPFSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGVLDRLS
Subjt:  THRKEEVGTICLLCFSNLISDPFSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGVLDRLS

Query:  YAVLAWSPRQVYMVPNVR
        YAVLAWSPRQVYMVPNVR
Subjt:  YAVLAWSPRQVYMVPNVR

XP_022992066.1 protein PRD1 [Cucurbita maxima]2.5e-3055.47Show/hide
Query:  HDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCD
        H H S    H        +E G+ICLLCFSNLISDP S         S      SQ P LRTFL+FHSHF+V  F+  L S+DDDP+A Q+T LV +LCD
Subjt:  HDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCD

Query:  VTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMV
        V+EADGDGS+CD+F+A V DRLS   LAWS RQVYM+
Subjt:  VTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMV

XP_023547735.1 protein PRD1 [Cucurbita pepo subsp. pepo]1.9e-3055.47Show/hide
Query:  HDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCD
        H H S    H        +E G+ICLLCFSNLISDP S         S      SQ P LRTFL+FHSHF+V  F+  L S+DDDP+A Q+T LV +LCD
Subjt:  HDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCD

Query:  VTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMV
        V+EADGDGS+CD+F+A V DRLS   LAWS RQVYM+
Subjt:  VTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMV

XP_038884337.1 LOW QUALITY PROTEIN: protein PUTATIVE RECOMBINATION INITIATION DEFECT 1-like [Benincasa hispida]5.0e-3161.72Show/hide
Query:  HRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLGLFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGS
        HR +     +E GTICLLCFSNLISDP S     S +L  FSQ     P L+TFLTFHSH IV  F+A L S+DDD IA QVT LV  LCD+TE DGDGS
Subjt:  HRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLGLFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGS

Query:  ICDNFIAGVLDRLSYAVLAWSPRQVYMV
        +CD+FIA V DRLS   LAWS RQVYM+
Subjt:  ICDNFIAGVLDRLSYAVLAWSPRQVYMV

TrEMBL top hitse value%identityAlignment
A0A6J1D8C7 protein PRD1 isoform X12.3e-2953.69Show/hide
Query:  NQHRKNRIDPFFHDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLGLFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIA
        +Q+R N      H H S    H        +E GTICLLCFSNLISDP S     S +L   SQ     P LRTFLTFHSHFIV  F+A L  +DD+PIA
Subjt:  NQHRKNRIDPFFHDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLGLFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIA

Query:  CQVTGLVHKLCDVTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMV
         Q+T LV +LCD + ADGDGS+ ++FIA V DRLS   LAWS RQVYM+
Subjt:  CQVTGLVHKLCDVTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMV

A0A6J1DAL8 protein PRD1 isoform X32.3e-2953.69Show/hide
Query:  NQHRKNRIDPFFHDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLGLFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIA
        +Q+R N      H H S    H        +E GTICLLCFSNLISDP S     S +L   SQ     P LRTFLTFHSHFIV  F+A L  +DD+PIA
Subjt:  NQHRKNRIDPFFHDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLGLFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIA

Query:  CQVTGLVHKLCDVTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMV
         Q+T LV +LCD + ADGDGS+ ++FIA V DRLS   LAWS RQVYM+
Subjt:  CQVTGLVHKLCDVTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMV

A0A6J1DBD4 protein PRD1 isoform X22.3e-2953.69Show/hide
Query:  NQHRKNRIDPFFHDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLGLFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIA
        +Q+R N      H H S    H        +E GTICLLCFSNLISDP S     S +L   SQ     P LRTFLTFHSHFIV  F+A L  +DD+PIA
Subjt:  NQHRKNRIDPFFHDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS-----SSSLGLFSQL----PLLRTFLTFHSHFIVPSFIAVLFSYDDDPIA

Query:  CQVTGLVHKLCDVTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMV
         Q+T LV +LCD + ADGDGS+ ++FIA V DRLS   LAWS RQVYM+
Subjt:  CQVTGLVHKLCDVTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMV

A0A6J1ET85 protein PRD17.9e-3054.74Show/hide
Query:  HDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCD
        H H S    H        +E G+ICLLCFSNLISDP S         S      SQ P LRTFL+FHSHF+V  F+  L S+DD P+A Q+T LV +LCD
Subjt:  HDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCD

Query:  VTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMV
        V+EADGDGS+CD+F+A V DRLS   LAWS RQVYM+
Subjt:  VTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMV

A0A6J1JSI6 protein PRD11.2e-3055.47Show/hide
Query:  HDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCD
        H H S    H        +E G+ICLLCFSNLISDP S         S      SQ P LRTFL+FHSHF+V  F+  L S+DDDP+A Q+T LV +LCD
Subjt:  HDHASMATFHRFAFTHRKEEVGTICLLCFSNLISDPFS---------SSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCD

Query:  VTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMV
        V+EADGDGS+CD+F+A V DRLS   LAWS RQVYM+
Subjt:  VTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMV

SwissProt top hitse value%identityAlignment
O23277 Protein PUTATIVE RECOMBINATION INITIATION DEFECT 11.3e-1638.17Show/hide
Query:  ATFHRFAFTHRKEEVGTICLLCFSNLISDP--------FSSSSLGLFSQLPL-LRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADG
        A  HR   + R ++ GT CL+CFSNL+SDP        ++   L +    P+ LRT L+ H HF+V   +  L S DD PIA Q+  ++  LC V E+  
Subjt:  ATFHRFAFTHRKEEVGTICLLCFSNLISDP--------FSSSSLGLFSQLPL-LRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADG

Query:  DGSICDNFIAGVLDRLSYAVLAWSPRQVYMV
          SI ++F+  + D+LS   L WS RQ++M+
Subjt:  DGSICDNFIAGVLDRLSYAVLAWSPRQVYMV

Arabidopsis top hitse value%identityAlignment
AT4G14180.1 putative recombination initiation defect 18.9e-1838.17Show/hide
Query:  ATFHRFAFTHRKEEVGTICLLCFSNLISDP--------FSSSSLGLFSQLPL-LRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADG
        A  HR   + R ++ GT CL+CFSNL+SDP        ++   L +    P+ LRT L+ H HF+V   +  L S DD PIA Q+  ++  LC V E+  
Subjt:  ATFHRFAFTHRKEEVGTICLLCFSNLISDP--------FSSSSLGLFSQLPL-LRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADG

Query:  DGSICDNFIAGVLDRLSYAVLAWSPRQVYMV
          SI ++F+  + D+LS   L WS RQ++M+
Subjt:  DGSICDNFIAGVLDRLSYAVLAWSPRQVYMV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACTTGGGAGCGGGGACATCCTCGGCGAAGACACACGATATACCGAAGAGAAAAAGGATAAACAGGATTGAAAAGAGATGGATATTTGGACATCTCGCCGGAGAAGA
AGAGAACGCCATAAAAAGTTCACCATTTGCGCGCCAAAATTTCGAAAAGCCCCGCCATCTCTCGAAGAGATTACCAGAAGTGTTCTTCGGCGAGGGAAACATCCAGACCC
CGAATCAGCACAGGAAGAACAGGATCGATCCATTCTTCCATGATCATGCTTCCATGGCGACCTTTCATCGCTTTGCCTTCACACACAGGAAGGAGGAAGTAGGAACGATT
TGCCTTCTCTGCTTCTCCAACCTCATCTCCGATCCCTTCTCTTCCAGTTCTCTCGGGCTTTTTTCTCAGCTTCCATTACTCCGCACCTTCCTCACTTTCCACTCTCACTT
TATCGTCCCTTCCTTCATCGCCGTGCTCTTCTCCTACGACGATGATCCCATTGCTTGCCAAGTCACCGGTCTTGTTCACAAGCTCTGTGATGTGACTGAAGCTGACGGTG
ATGGATCCATTTGCGATAATTTCATTGCCGGAGTTTTGGATCGGCTTTCTTATGCCGTGTTGGCGTGGAGTCCTCGCCAAGTGTATATGGTACCAAATGTACGATAA
mRNA sequenceShow/hide mRNA sequence
ATGCACTTGGGAGCGGGGACATCCTCGGCGAAGACACACGATATACCGAAGAGAAAAAGGATAAACAGGATTGAAAAGAGATGGATATTTGGACATCTCGCCGGAGAAGA
AGAGAACGCCATAAAAAGTTCACCATTTGCGCGCCAAAATTTCGAAAAGCCCCGCCATCTCTCGAAGAGATTACCAGAAGTGTTCTTCGGCGAGGGAAACATCCAGACCC
CGAATCAGCACAGGAAGAACAGGATCGATCCATTCTTCCATGATCATGCTTCCATGGCGACCTTTCATCGCTTTGCCTTCACACACAGGAAGGAGGAAGTAGGAACGATT
TGCCTTCTCTGCTTCTCCAACCTCATCTCCGATCCCTTCTCTTCCAGTTCTCTCGGGCTTTTTTCTCAGCTTCCATTACTCCGCACCTTCCTCACTTTCCACTCTCACTT
TATCGTCCCTTCCTTCATCGCCGTGCTCTTCTCCTACGACGATGATCCCATTGCTTGCCAAGTCACCGGTCTTGTTCACAAGCTCTGTGATGTGACTGAAGCTGACGGTG
ATGGATCCATTTGCGATAATTTCATTGCCGGAGTTTTGGATCGGCTTTCTTATGCCGTGTTGGCGTGGAGTCCTCGCCAAGTGTATATGGTACCAAATGTACGATAAAGA
ATGATGGGGGTACTCAAACAGACTAAGAAATCGAAAATGTGTTTGTTGACGATCAAGGAGAAATTTGTGAGTATCTTATTCACTTGATTCAATCAGATGCACACAAGAAT
GAAAGATTATCTAACGAAATAGAGTTGTTTTTTTAGGGCTTTAGCAGAAAAAGATACCAACTAATCTTTTACCTGTACTACCCATTGATTCAAGTGAAGTAATAACCATT
AAAGGTACATCAAATTTACAACAAACAAAACATATAAAACTCCCCACTGTAAAGCTCTCCTGGTTGTCAATGGCCATCAAATCCCTACAAAAAATTGATACAGGCACATG
CATACCAAGCTATTTTATCTGGTTTTCAGTCCCATTCCCCCCTGGTTTTCATAAACTAGATCAATGAGTTCTTCATAAGTCCAAACTTTACTTTCCCTACCCACAAGTTC
CAGGGAAGCGTATGCCTCTTCACAGTCTTTAAGGAACCTCCCTTTTCCAAATGCAGCTAAAACAAGCGAGTCGGTGTTTATTTCCACAGCTCTGGATAGCAAGTTCATCC
TTTTCCATGCCTCTAAAATTCTGGTTCCATCAAAACTTTTGTTATTTGCATCTAATAGAATTCCAATGGTTACTATATCAGGTTTCACATGTCTTGCTCGTATTTCAGAG
AACAGTGTTCTGAGCCGTTTAAAATCTTTCATTTTCAAATAAGCTAGAAGTAAAATGTTTGCAACAGTCGCATTCCAAATTTCGTTAGCTTTGTCCATTTCCTGAACAAC
AGAGTCCATACCCCTTCGACTTGATAGACAAGCATGTGATAGAAGAAGCAGGCACCAAACAAGATCTGTCTTCCCAGCTTTGATGTGAAGATCGATACCCAAGGTCTCTA
TTCTTGAATACATATGGTTCTGAATATAAACTAGAGCCAACGTTCTGATTAGATCCTCCTTCATATTGGTCTTTGAGTTCAGGATCCTTCTGTAGAACATTTCCATTTTG
TCCAAGATACCAAATTTGGCATAAGCTTCCAACATGGCAACCAAGGTAGATGACTGTAAATCCATTCTTTTTGAAAGAATGCTTCGGTATAATCCTTCCATCTTTTTAAG
CAAACCACCTTTGGAGAACTCTCTGATAAGCAAATTGTAAGTTATGTGGTCCGGAATACATCCATCCAGTTCCATCTGTTTCAGACACTCGATCATCTCATCGTACATTC
TATATTTTCCATAGGCTTCAATTAGGCCATCATAGGTATCAGCTTCTCGAGTCATATTGATTTCTTTCATCTCATCAATGAAAAGCAAAGCAATTTCAAACTTGCCCCTT
GCAGCAAAACCATGGATGAGCGAATTGTAAGTACCTAAAGATGGTCGAAGGCCAATACTTTTCATATCTTGAAATGATGATACAGCATCCTCCATAAGACCATCTTGACT
CAATAGAACTATTACTTTCTCATAGTTACTTTCATTGATCCGCGATCCCTCAATGCTCTTCCATGTATCAAATAGCTGCACAAAGTTTCAAAATTTCATTGGTCACAGGC
ACTAGAACTTGCAAAAGCACTTGGATCCAAGCCATTATATAGATCTTAAATGGTACTCAATAATCAATCCCTGTAGCATCCCGGAAAAGACCGAAGAAAATATATTGTTA
TTTGAAAAAAGAAATAGGATATAAGAATCT
Protein sequenceShow/hide protein sequence
MHLGAGTSSAKTHDIPKRKRINRIEKRWIFGHLAGEEENAIKSSPFARQNFEKPRHLSKRLPEVFFGEGNIQTPNQHRKNRIDPFFHDHASMATFHRFAFTHRKEEVGTI
CLLCFSNLISDPFSSSSLGLFSQLPLLRTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTGLVHKLCDVTEADGDGSICDNFIAGVLDRLSYAVLAWSPRQVYMVPNVR