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Carg05002 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05002
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMADS-box transcription factor
Genome locationCarg_Chr08:952881..953745
RNA-Seq ExpressionCarg05002
SyntenyCarg05002
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592961.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. sororia]8.6e-33100Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGDRCQHQSIYV
        MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGDRCQHQSIYV
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGDRCQHQSIYV

KAG7014654.1 Agamous-like MADS-box protein AGL3, partial [Cucurbita argyrosperma subsp. argyrosperma]3.9e-2591.94Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGDR
        MGRKKIE+KRIED CNRHVTFCKRR+GLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSG+R
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGDR

XP_022959860.1 truncated transcription factor CAULIFLOWER D-like [Cucurbita moschata]1.6e-26100Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD
        MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD

XP_023004227.1 MADS-box protein 04g005320-like [Cucurbita maxima]2.0e-2698.36Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD
        MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSGD
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD

XP_023514206.1 MADS-box protein 04g005320-like [Cucurbita pepo subsp. pepo]1.6e-26100Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD
        MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD

TrEMBL top hitse value%identityAlignment
A0A6J1DME3 MADS-box protein FLOWERING LOCUS C-like isoform X17.9e-2488.52Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD
        MGRKKIE+KRIED CNRHVTFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEFC G+
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD

A0A6J1DPA0 MADS-box transcription factor 8-like isoform X37.9e-2488.52Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD
        MGRKKIE+KRIED CNRHVTFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEFC G+
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD

A0A6J1DRL9 MADS-box protein FLOWERING LOCUS C-like isoform X27.9e-2488.52Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD
        MGRKKIE+KRIED CNRHVTFCKRRSGLIKKARELSVLCDVE+GL++FTNRGRLYEFC G+
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD

A0A6J1H7I9 truncated transcription factor CAULIFLOWER D-like7.6e-27100Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD
        MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD

A0A6J1KPU7 MADS-box protein 04g005320-like9.9e-2798.36Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD
        MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLV+FTNRGRLYEFCSGD
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGD

SwissProt top hitse value%identityAlignment
P29383 Agamous-like MADS-box protein AGL31.3e-1871.19Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS
        MGR K+ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD E+ L++F+NRG+LYEFCS
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS

P29384 Developmental protein SEPALLATA 29.6e-1972.88Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS
        MGR ++ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD EV L+VF+NRG+LYEFCS
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS

Q03489 Agamous-like MADS-box protein AGL9 homolog1.3e-1871.19Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS
        MGR ++ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS

Q39685 MADS-box protein CMB19.6e-1972.88Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS
        MGR ++ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD EV L+VF+NRG+LYEFCS
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS

Q9SAR1 MADS-box transcription factor 81.9e-1971.67Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG
        MGR ++ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCSG
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSG

Arabidopsis top hitse value%identityAlignment
AT1G24260.1 K-box region and MADS-box transcription factor family protein8.9e-2071.19Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS
        MGR ++ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS

AT1G24260.2 K-box region and MADS-box transcription factor family protein8.9e-2071.19Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS
        MGR ++ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS

AT1G24260.3 K-box region and MADS-box transcription factor family protein8.9e-2071.19Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS
        MGR ++ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD EV L++F+NRG+LYEFCS
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS

AT2G03710.1 K-box region and MADS-box transcription factor family protein8.9e-2071.19Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS
        MGR K+ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD E+ L++F+NRG+LYEFCS
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS

AT3G02310.1 K-box region and MADS-box transcription factor family protein6.8e-2072.88Show/hide
Query:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS
        MGR ++ELKRIE+  NR VTF KRR+GL+KKA ELSVLCD EV L+VF+NRG+LYEFCS
Subjt:  MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACGGAAGAAGATCGAGTTGAAGCGGATCGAAGATATGTGTAATCGACATGTGACTTTCTGCAAGAGAAGATCTGGATTAATCAAGAAGGCTCGAGAACTCTCTGT
TCTCTGCGACGTTGAGGTCGGACTCGTCGTCTTCACCAACCGCGGCCGTCTCTATGAGTTTTGCAGCGGCGACAGGTGTCAACATCAAAGTATTTATGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGACGGAAGAAGATCGAGTTGAAGCGGATCGAAGATATGTGTAATCGACATGTGACTTTCTGCAAGAGAAGATCTGGATTAATCAAGAAGGCTCGAGAACTCTCTGT
TCTCTGCGACGTTGAGGTCGGACTCGTCGTCTTCACCAACCGCGGCCGTCTCTATGAGTTTTGCAGCGGCGACAGGTGTCAACATCAAAGTATTTATGTATAG
Protein sequenceShow/hide protein sequence
MGRKKIELKRIEDMCNRHVTFCKRRSGLIKKARELSVLCDVEVGLVVFTNRGRLYEFCSGDRCQHQSIYV