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Carg05003 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05003
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMADS-box transcription factor 8-like
Genome locationCarg_Chr08:966775..974544
RNA-Seq ExpressionCarg05003
SyntenyCarg05003
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592962.1 hypothetical protein SDJN03_12438, partial [Cucurbita argyrosperma subsp. sororia]6.8e-4668.79Show/hide
Query:  MLIGGGKKFINGHGNKRDENSSYVHNIARGVYRVTMKMDKDIENATKATLKGEVKVKVKMRLIQRSMKNLKRHSWCHLESSYKLFKGNFLSIFELVVFSH
        MLIGGGKKFINGHGNKRDENSSYVHNIARGVYRVTMKMDKDIEN      + +   + + +   ++  + K H     E S +    +F  + +  + SH
Subjt:  MLIGGGKKFINGHGNKRDENSSYVHNIARGVYRVTMKMDKDIENATKATLKGEVKVKVKMRLIQRSMKNLKRHSWCHLESSYKLFKGNFLSIFELVVFSH

Query:  VEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL
        VEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL
Subjt:  VEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL

KAG7025373.1 hypothetical protein SDJN02_11868, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-80100Show/hide
Query:  MLIGGGKKFINGHGNKRDENSSYVHNIARGVYRVTMKMDKDIENATKATLKGEVKVKVKMRLIQRSMKNLKRHSWCHLESSYKLFKGNFLSIFELVVFSH
        MLIGGGKKFINGHGNKRDENSSYVHNIARGVYRVTMKMDKDIENATKATLKGEVKVKVKMRLIQRSMKNLKRHSWCHLESSYKLFKGNFLSIFELVVFSH
Subjt:  MLIGGGKKFINGHGNKRDENSSYVHNIARGVYRVTMKMDKDIENATKATLKGEVKVKVKMRLIQRSMKNLKRHSWCHLESSYKLFKGNFLSIFELVVFSH

Query:  VEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL
        VEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL
Subjt:  VEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL

XP_022959860.1 truncated transcription factor CAULIFLOWER D-like [Cucurbita moschata]2.4e-22100Show/hide
Query:  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL
        SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL
Subjt:  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL

XP_023004227.1 MADS-box protein 04g005320-like [Cucurbita maxima]1.2e-2198.31Show/hide
Query:  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL
        SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWID MDMAIAMVDSQL
Subjt:  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL

XP_023514206.1 MADS-box protein 04g005320-like [Cucurbita pepo subsp. pepo]2.4e-22100Show/hide
Query:  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL
        SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL
Subjt:  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL

TrEMBL top hitse value%identityAlignment
A0A0A0KFD8 Uncharacterized protein4.2e-0937.82Show/hide
Query:  MDKDIENATKATLKGEVKVKVKMRLIQRSMKNLKRHSWCHLESSYKLFKGNFLSIFELVVFSHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMM
        +D D++  +++ +  + K  V    I  S+K L +                        + S VEEP+FKKL++  MV LENQLE++LDKIKSQR+EAM+
Subjt:  MDKDIENATKATLKGEVKVKVKMRLIQRSMKNLKRHSWCHLESSYKLFKGNFLSIFELVVFSHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMM

Query:  ENSS-WIDNMDMAIAMVDS
        EN   W  +MDMA+ M++S
Subjt:  ENSS-WIDNMDMAIAMVDS

A0A1S3CCC5 MADS-box transcription factor 8-like9.4e-0960.34Show/hide
Query:  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSS-WIDNMDMAIAMVDS
        S VEEP+FKKL++  MV LENQLE +LDKIKSQR+EAM+EN   W  +M++A+ M++S
Subjt:  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSS-WIDNMDMAIAMVDS

A0A6J1DPA0 MADS-box transcription factor 8-like isoform X31.1e-0976.09Show/hide
Query:  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWID
        S VEEPDFKKLNV +M+ LENQLEA+LDKIK QR+EAMMEN  W D
Subjt:  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWID

A0A6J1H7I9 truncated transcription factor CAULIFLOWER D-like1.1e-22100Show/hide
Query:  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL
        SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL
Subjt:  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL

A0A6J1KPU7 MADS-box protein 04g005320-like5.7e-2298.31Show/hide
Query:  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL
        SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWID MDMAIAMVDSQL
Subjt:  SHVEEPDFKKLNVNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCATTGGAGGAGGAAAGAAGTTTATCAATGGCCATGGAAACAAAAGAGATGAAAATTCCTCCTACGTCCATAACATAGCAAGAGGAGTTTATAGAGTGACGATGAA
GATGGATAAGGATATTGAGAACGCTACCAAAGCCACTTTGAAGGGAGAAGTCAAAGTCAAAGTCAAAATGAGGTTGATACAAAGGAGCATGAAGAATCTGAAGAGACACT
CATGGTGTCATTTGGAAAGCTCCTACAAACTATTCAAAGGCAATTTTCTTTCTATATTTGAACTGGTCGTTTTTAGTCATGTTGAAGAACCAGATTTCAAAAAGCTCAAT
GTAAATGATATGGTGCACCTGGAGAATCAACTTGAAGCCTCACTTGACAAAATCAAATCTCAAAGAGTTGAGGCAATGATGGAAAATAGCAGTTGGATAGACAACATGGA
TATGGCTATCGCCATGGTCGACAGCCAACTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCATTGGAGGAGGAAAGAAGTTTATCAATGGCCATGGAAACAAAAGAGATGAAAATTCCTCCTACGTCCATAACATAGCAAGAGGAGTTTATAGAGTGACGATGAA
GATGGATAAGGATATTGAGAACGCTACCAAAGCCACTTTGAAGGGAGAAGTCAAAGTCAAAGTCAAAATGAGGTTGATACAAAGGAGCATGAAGAATCTGAAGAGACACT
CATGGTGTCATTTGGAAAGCTCCTACAAACTATTCAAAGGCAATTTTCTTTCTATATTTGAACTGGTCGTTTTTAGTCATGTTGAAGAACCAGATTTCAAAAAGCTCAAT
GTAAATGATATGGTGCACCTGGAGAATCAACTTGAAGCCTCACTTGACAAAATCAAATCTCAAAGAGTTGAGGCAATGATGGAAAATAGCAGTTGGATAGACAACATGGA
TATGGCTATCGCCATGGTCGACAGCCAACTTTAATTAGTGAAGTGCCTCGAACAACAATGTGGTTGATAATGTAGTCCCAAATAAAATAAAGAGAAGCTGCACAATTGTA
TGAGTTCCTAACACCCTGCTAACCTGCAAAAGCAAATCTGCATACTATGTGACATCTGAATATACATATAATGGTTCTAGCATAATATCAGGTAAAATGACCATGCAGCA
GCAAACACTTACTTGATGCTGCATAATTAAATTTTATCCATTAATGTTTACAATTTTCTCTCTAAATTGATTCCATAAAACT
Protein sequenceShow/hide protein sequence
MLIGGGKKFINGHGNKRDENSSYVHNIARGVYRVTMKMDKDIENATKATLKGEVKVKVKMRLIQRSMKNLKRHSWCHLESSYKLFKGNFLSIFELVVFSHVEEPDFKKLN
VNDMVHLENQLEASLDKIKSQRVEAMMENSSWIDNMDMAIAMVDSQL