CuGenDBv2

Gene ID	Carg05027
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RRM domain-containing protein
Genome location	Carg_Chr08:1124896..1127838
RNA-Seq Expression	Carg05027
Synteny	Carg05027
Gene Ontology terms	GO:0006396 - RNA processing (biological process) GO:0032991 - protein-containing complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6592987.1 hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sororia]

2.8e-137

98.83

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Query:  LTAIGGDPTTSTFFHQIHLHFSTLRSSVVCSTATGSCPALTVAHFVSPLRTSSLSSHMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGT
        L +IGGDPTTSTFFHQIHLHFSTLRSSVVCSTATGSCPALTVAHFV PLRTSSLSSHMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGT
Subjt:  LTAIGGDPTTSTFFHQIHLHFSTLRSSVVCSTATGSCPALTVAHFVSPLRTSSLSSHMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGT

Query:  VVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAE
        VVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAE
Subjt:  VVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAE

Query:  AAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
        AAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
Subjt:  AAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

KAG7025396.1 hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.6e-139

100

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Query:  LTAIGGDPTTSTFFHQIHLHFSTLRSSVVCSTATGSCPALTVAHFVSPLRTSSLSSHMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGT
        LTAIGGDPTTSTFFHQIHLHFSTLRSSVVCSTATGSCPALTVAHFVSPLRTSSLSSHMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGT
Subjt:  LTAIGGDPTTSTFFHQIHLHFSTLRSSVVCSTATGSCPALTVAHFVSPLRTSSLSSHMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGT

Query:  VVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAE
        VVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAE
Subjt:  VVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAE

Query:  AAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
        AAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
Subjt:  AAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

XP_022959585.1 uncharacterized protein LOC111460615 [Cucurbita moschata]

1.8e-104

98.99

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE
        MGSATDEQY KFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVIS+IAQFPFMMSGMPRPVRAYPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

XP_023004840.1 uncharacterized protein LOC111498019 [Cucurbita maxima]

1.2e-103

97.99

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVI+QFPFMMSGMPRPVRAYPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPGRKISFVWLGK+DPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALK NYKKYEI+EGVMTDGTARRLARRYNMRVADD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

XP_023514768.1 uncharacterized protein LOC111778981 [Cucurbita pepo subsp. pepo]

2.8e-105

100

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAE7 RRM domain-containing protein

3.7e-87

82.91

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE
        MGS  DEQ+A FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
        VEMFDDRP+KPGRKISF WL  DDPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LK NYKKYEIV+ VM DGTARRLA+ YNMR++DD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

A0A1S3B3J3 uncharacterized protein LOC103485592

1.5e-88

83.92

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE
        MGSA DEQ++ FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPN+TEPINSSQCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
         EMFDDRP+KPGRKISF WL  DDPDFEVA+++K LT++HVAEAAFLLKQ L EEEKLAKQQQ+ L+ NYKKYEIV+ VM DGTARRLA+ YNMRV+DD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

A0A6J1DB90 uncharacterized protein LOC111018537

3.4e-85

81.91

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE
        MGSAT+EQ+A FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPN+ EP+NSSQCALVEMKD KEA SVISVIA+FPFM+SGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPG KISF WL ++DPDF+VAKKMK  T++H AE AFLLKQQL+EEEKLAKQQQ+ LK NYKK+EIVE VMTDGTARRLA+ Y+MRV DD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

A0A6J1H6P8 uncharacterized protein LOC111460615

8.7e-105

98.99

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE
        MGSATDEQY KFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVIS+IAQFPFMMSGMPRPVRAYPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

A0A6J1KVQ1 uncharacterized protein LOC111498019

5.7e-104

97.99

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVI+QFPFMMSGMPRPVRAYPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPGRKISFVWLGK+DPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALK NYKKYEI+EGVMTDGTARRLARRYNMRVADD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G05970.1 RNA-binding (RRM/RBD/RNP motifs) family protein

1.2e-45

46.67

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE
        M +  +  Y KF E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPN+  P       LVEM++ +   +VIS ++Q PFM++GMPRPVRA  AE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMR
          MF D+P KPGR + F W+  +DPDF+ A+++K L ++H AE +F+LK  L E EKL+KQQ +    ++KK+E+++ ++ DG A++LA RY+++
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMR

AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein

9.7e-48

47.18

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE
        M +  +  Y KF E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPN+  P       LVEM++ +   +VIS ++Q PFM++GMPRPVRA  AE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMR
          MF D+P KPGR + F W+  +DPDF+ A+++K L ++H AE +F+LK+QL E EKL+KQQ +    ++KK+E+++ ++ DG A++LA RY+++
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMR

Sequences

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CDS sequence

Show/hide CDS sequence

mRNA sequence

Show/hide mRNA sequence

CTGACAGCCATTGGAGGAGACCCCACCACCTCCACCTTTTTTCATCAAATTCATCTCCATTTCTCCACGCTCCGCTCCTCCGTTGTTTGTTCTACTGCTACAGGCTCATG
CCCCGCGCTCACCGTTGCTCATTTCGTTTCTCCGCTTCGGACTAGTTCTTTATCATCCCACATGGGATCAGCTACGGATGAACAATATGCCAAGTTTGAGGAAAAGGTAA
AACGGACTGTCTATGTTGATAATCTCTCCCCCCAAGTGACTGAGCCTGTCTTGAGAACCGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATTCCAAATTTC
ACGGAGCCAATTAATAGCTCTCAATGTGCTTTAGTCGAGATGAAGGACTCGAAGGAGGCAAATTCTGTCATCTCTGTGATAGCTCAGTTCCCTTTCATGATGTCTGGAAT
GCCGAGACCGGTGAGGGCGTACCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTATAAAGCCCGGTAGGAAGATTAGCTTTGTCTGGTTGGGAAAGGATGATCCTGACT
TTGAAGTGGCAAAGAAAATGAAGTGTCTTACTCAGAGGCATGTCGCTGAAGCTGCATTCTTGCTGAAGCAACAGTTGGTGGAAGAGGAGAAGCTTGCAAAGCAGCAGCAA
GATGCACTGAAAGCAAACTACAAGAAATATGAGATCGTTGAAGGTGTAATGACTGATGGAACTGCCCGCAGGTTAGCAAGGCGTTATAATATGCGAGTTGCAGATGATTA
ATTGCATGCTTTGAAGCTTTTTTTGCACTCCTAATTGCCTGATCACGTAAATTTTGTACAAATTATCACTTAGATGGCCTTATAGAGATTAATTAGAGAATTCTGTTGTG
ATTTAGAGGGAGAAGGATAGTTAATTAGTGTAATACTCCTATTATTACTCTTTTGGATTGGTCTCTTGTTTGGGAAATGACTTCGGTTTAAAATCATCTAAAGACATTCG
TTCCTATAAGAGCTTGAGAACGGACAAAGGCATAGGTCGAACACCTCAAAGAAACAACTCTAAACTTTTAAGGACCCTATCCCATCGAAAACAGATATTGTCTTCTTTAG
GCTTTCCTTTCTGGGTTTCCCCTTAAGATTTTTACACTATCCTTCCAACCATTGTGTGATCTCA

Protein sequence

Show/hide protein sequence

LTAIGGDPTTSTFFHQIHLHFSTLRSSVVCSTATGSCPALTVAHFVSPLRTSSLSSHMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNF
TEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQ
DALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

Carg05027 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome