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Carg05090 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05090
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAtp-dependent rna helicase dbp7
Genome locationCarg_Chr08:1533612..1535519
RNA-Seq ExpressionCarg05090
SyntenyCarg05090
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150335.2 uncharacterized protein LOC101219200 [Cucumis sativus]2.3e-5075.91Show/hide
Query:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKWTESPPQVTLH--PPKPMPK
        MEDY Y+RN+IP+FGNWEWNDHLPF+ CFE+SRIAG+P   DLYVAGDLY+NDVVTPAMIVVPRPRRKRDR GKQ K++KW  SP     H    KPMPK
Subjt:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKWTESPPQVTLH--PPKPMPK

Query:  PVDEDLYKISPN-PCAKPKKKRGLSYITSCFVPTCLI
        PVDEDLYKISP+   AK KKKRGLSYIT+CFVPTCLI
Subjt:  PVDEDLYKISPN-PCAKPKKKRGLSYITSCFVPTCLI

XP_022960043.1 uncharacterized protein LOC111460910 [Cucurbita moschata]6.0e-75100Show/hide
Query:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKWTESPPQVTLHPPKPMPKPV
        MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKWTESPPQVTLHPPKPMPKPV
Subjt:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKWTESPPQVTLHPPKPMPKPV

Query:  DEDLYKISPNPCAKPKKKRGLSYITSCFVPTCLI
        DEDLYKISPNPCAKPKKKRGLSYITSCFVPTCLI
Subjt:  DEDLYKISPNPCAKPKKKRGLSYITSCFVPTCLI

XP_023548222.1 uncharacterized protein LOC111806925 [Cucurbita pepo subsp. pepo]6.4e-4566.43Show/hide
Query:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKW------TESPPQVTLHPPK
        MEDY  +RN+IP+FGNWEWNDHL F+ CFE+SRIAGYP   DLYV GDLY+NDVVTPAMIVVPR RRKR++ GKQ K+  W      TESPP   L  P+
Subjt:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKW------TESPPQVTLHPPK

Query:  PMPKPVDEDLYKISPNPCAKPKKKRGLSYITSCFVPTCLI
        P PKPVDEDLYKI P   AK +KKRGLS+  + FVP CLI
Subjt:  PMPKPVDEDLYKISPNPCAKPKKKRGLSYITSCFVPTCLI

XP_023550147.1 uncharacterized protein LOC111808425 [Cucurbita pepo subsp. pepo]4.3e-7398.51Show/hide
Query:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKWTESPPQVTLHPPKPMPKPV
        MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQE QQKWTESPPQVTLHPPKPMPKPV
Subjt:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKWTESPPQVTLHPPKPMPKPV

Query:  DEDLYKISPNPCAKPKKKRGLSYITSCFVPTCLI
        DEDLYKISPN CAKPKKKRGLSYITSCFVPTCLI
Subjt:  DEDLYKISPNPCAKPKKKRGLSYITSCFVPTCLI

XP_038899118.1 uncharacterized protein LOC120086508 [Benincasa hispida]1.6e-5175Show/hide
Query:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKW---TESPP--QVTLHPPKP
        MEDY Y+RN+IP+FGNWEWNDHLPF+ CF++SRIAGYP   DLYVAGDLYQNDVVTPAMIVVPRPRRKRDR GKQ +++ W   TESPP   +  +  KP
Subjt:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKW---TESPP--QVTLHPPKP

Query:  MPKPVDEDLYKISPN-PCAKPKKKRGLSYITSCFVPTCLI
        MPKPVDEDLYKISP+   AK KKKRGLSYIT+CFVPTCLI
Subjt:  MPKPVDEDLYKISPN-PCAKPKKKRGLSYITSCFVPTCLI

TrEMBL top hitse value%identityAlignment
A0A0A0KA54 Uncharacterized protein1.1e-5075.91Show/hide
Query:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKWTESPPQVTLH--PPKPMPK
        MEDY Y+RN+IP+FGNWEWNDHLPF+ CFE+SRIAG+P   DLYVAGDLY+NDVVTPAMIVVPRPRRKRDR GKQ K++KW  SP     H    KPMPK
Subjt:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKWTESPPQVTLH--PPKPMPK

Query:  PVDEDLYKISPN-PCAKPKKKRGLSYITSCFVPTCLI
        PVDEDLYKISP+   AK KKKRGLSYIT+CFVPTCLI
Subjt:  PVDEDLYKISPN-PCAKPKKKRGLSYITSCFVPTCLI

A0A6J1GPL2 uncharacterized protein LOC1114559792.0e-4466.91Show/hide
Query:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQ-----QKWTESPPQVTLHPPKP
        MEDY  +RN+IP+FGNWEWNDHL F+ CFE+SRIAGYP   DLYV GDLY+NDVVTPAMIVVPR RRKR++ GKQ K+      K TESPP   L  P+P
Subjt:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQ-----QKWTESPPQVTLHPPKP

Query:  MPKPVDEDLYKISPNPCAKPKKKRGLSYITSCFVPTCLI
         PKPVDEDLYKI P   AK +KKRGLS+  + FVP CLI
Subjt:  MPKPVDEDLYKISPNPCAKPKKKRGLSYITSCFVPTCLI

A0A6J1H7P4 uncharacterized protein LOC1114609102.9e-75100Show/hide
Query:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKWTESPPQVTLHPPKPMPKPV
        MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKWTESPPQVTLHPPKPMPKPV
Subjt:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKWTESPPQVTLHPPKPMPKPV

Query:  DEDLYKISPNPCAKPKKKRGLSYITSCFVPTCLI
        DEDLYKISPNPCAKPKKKRGLSYITSCFVPTCLI
Subjt:  DEDLYKISPNPCAKPKKKRGLSYITSCFVPTCLI

A0A6J1JQ37 uncharacterized protein LOC1114879311.5e-4464.29Show/hide
Query:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKW------TESPPQVTLHPPK
        MEDY  +RN+IP+FGNWEWNDHL F+ CFE+SRIAGYP   DLYV GDLY+ND++TPAMIVVPR RRKR++ GK+ K+  W      TESPP   L  P+
Subjt:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKW------TESPPQVTLHPPK

Query:  PMPKPVDEDLYKISPNPCAKPKKKRGLSYITSCFVPTCLI
        P PKPVDEDLYKI P   AK +KKRGLS+  + FVP CLI
Subjt:  PMPKPVDEDLYKISPNPCAKPKKKRGLSYITSCFVPTCLI

A0A6J1KPV8 uncharacterized protein LOC1114976312.9e-75100Show/hide
Query:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKWTESPPQVTLHPPKPMPKPV
        MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKWTESPPQVTLHPPKPMPKPV
Subjt:  MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKWTESPPQVTLHPPKPMPKPV

Query:  DEDLYKISPNPCAKPKKKRGLSYITSCFVPTCLI
        DEDLYKISPNPCAKPKKKRGLSYITSCFVPTCLI
Subjt:  DEDLYKISPNPCAKPKKKRGLSYITSCFVPTCLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G18310.1 unknown protein5.3e-0531.69Show/hide
Query:  EDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIA-------GYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQ------KWTESPPQV
        + Y  +   IP FG WE  + +P TQ FE  R A        +P  R L+      Q           P+ RR RD   + +K        K  ++   +
Subjt:  EDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIA-------GYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQ------KWTESPPQV

Query:  TLHPPKPMPKPVDEDLYKISPNPCAKPKKKRGLSYITSCFVP
        T  P    PKPVDEDLYKI P       +KR  S++ +C VP
Subjt:  TLHPPKPMPKPVDEDLYKISPNPCAKPKKKRGLSYITSCFVP

AT5G18310.2 unknown protein2.0e-0427.71Show/hide
Query:  EDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVV------------PRPRR---KRDRHGKQEKQ--------
        + Y  +   IP FG WE  + +P TQ FE  R AG   +R  Y       +   + +                PRPR    +R   G +EK+        
Subjt:  EDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVV------------PRPRR---KRDRHGKQEKQ--------

Query:  --------------QKWTESPPQVTLHPPKPMPKPVDEDLYKISPNPCAKPKKKRGLSYITSCFVP
                       K  ++   +T  P    PKPVDEDLYKI P       +KR  S++ +C VP
Subjt:  --------------QKWTESPPQVTLHPPKPMPKPVDEDLYKISPNPCAKPKKKRGLSYITSCFVP

AT5G48500.1 unknown protein2.5e-2341.1Show/hide
Query:  DYDY------QRNFIPTFGNWEWNDHLPFTQCFEAS--------RIAGYPDVRDLYVAGDLYQN-DVVTPAMIVVPR--------PRRKRDRHGKQEKQQ
        DY+Y      +R  +P FG+W+WND +PFTQCFE +          A YP  RDLY+AGDLY N  +V PA+I+VPR        P  K+    KQ+   
Subjt:  DYDY------QRNFIPTFGNWEWNDHLPFTQCFEAS--------RIAGYPDVRDLYVAGDLYQN-DVVTPAMIVVPR--------PRRKRDRHGKQEKQQ

Query:  KWTESPPQVTLHPPKPM-------PKPVDEDLYKISPNPCA-KPKKKR---GLSYITSCFVPT
        K         +  P P+       PKPVDEDLYK+SP   + K K+KR   G   I+ CF+PT
Subjt:  KWTESPPQVTLHPPKPM-------PKPVDEDLYKISPNPCA-KPKKKR---GLSYITSCFVPT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATTACGACTACCAGAGGAACTTCATCCCTACCTTCGGAAACTGGGAATGGAACGACCATCTCCCTTTCACGCAGTGCTTCGAAGCTTCCAGAATCGCCGGATA
TCCCGATGTTCGCGATCTCTACGTCGCCGGCGATCTCTACCAAAACGACGTCGTTACTCCCGCTATGATCGTCGTTCCGCGCCCCAGGAGAAAGCGTGACAGACATGGGA
AGCAAGAAAAGCAGCAAAAGTGGACCGAAAGCCCTCCTCAAGTAACACTGCACCCTCCAAAGCCAATGCCCAAACCCGTCGACGAAGACTTATACAAAATCTCTCCCAAT
CCCTGCGCCAAGCCCAAAAAGAAGAGAGGATTGAGTTACATAACGAGCTGCTTCGTGCCAACGTGTTTGATTTGA
mRNA sequenceShow/hide mRNA sequence
TTTTAATTTTCTTTTTACACCCACTTTGGATCCCTTAAAAAAAAAGGGTCAGAGCTTCTTTCTCTCTATAAACCCCCCCAATTACGATACCTTCTCTTCCAAAATTCTCA
ACTCTCTCTGCAAAAAAAAAGCTTGTTCACTTCATCAATGGAGGATTACGACTACCAGAGGAACTTCATCCCTACCTTCGGAAACTGGGAATGGAACGACCATCTCCCTT
TCACGCAGTGCTTCGAAGCTTCCAGAATCGCCGGATATCCCGATGTTCGCGATCTCTACGTCGCCGGCGATCTCTACCAAAACGACGTCGTTACTCCCGCTATGATCGTC
GTTCCGCGCCCCAGGAGAAAGCGTGACAGACATGGGAAGCAAGAAAAGCAGCAAAAGTGGACCGAAAGCCCTCCTCAAGTAACACTGCACCCTCCAAAGCCAATGCCCAA
ACCCGTCGACGAAGACTTATACAAAATCTCTCCCAATCCCTGCGCCAAGCCCAAAAAGAAGAGAGGATTGAGTTACATAACGAGCTGCTTCGTGCCAACGTGTTTGATTT
GAAGACGACGAGAAAGAGAGAGCGAAATGGTCAACGGGGACGAGGAATGTATATTTG
Protein sequenceShow/hide protein sequence
MEDYDYQRNFIPTFGNWEWNDHLPFTQCFEASRIAGYPDVRDLYVAGDLYQNDVVTPAMIVVPRPRRKRDRHGKQEKQQKWTESPPQVTLHPPKPMPKPVDEDLYKISPN
PCAKPKKKRGLSYITSCFVPTCLI