CuGenDBv2

Gene ID	Carg05152
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	F-box protein SNE-like
Genome location	Carg_Chr07:3198974..3199432
RNA-Seq Expression	Carg05152
Synteny	Carg05152
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0060791.1 F-box protein SNE [Cucumis melo var. makuwa]

3.0e-75

92.76

Show/hide

Query:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE VCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+ GDASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV

XP_004140002.1 F-box protein SNE [Cucumis sativus]

4.0e-75

92.76

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Query:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEKRRKFLINDNLDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE VCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+ G+ASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV

XP_016903159.1 PREDICTED: F-box protein SNE [Cucumis melo]

1.2e-74

92.11

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Query:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE VCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+ GDASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV

XP_022947535.1 F-box protein SNE-like [Cucurbita moschata]

1.4e-80

100

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Query:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV
        SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV

XP_038902594.1 F-box protein SNE [Benincasa hispida]

1.2e-76

94.74

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Query:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEKRRKFLINDNLDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE VCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+ GDASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAT5 F-box domain-containing protein

1.9e-75

92.76

Show/hide

Query:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEKRRKFLINDNLDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE VCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+ G+ASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV

A0A1S4E4K7 F-box protein SNE

5.6e-75

92.11

Show/hide

Query:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE VCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+ GDASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV

A0A5A7V4V6 F-box protein SNE

1.5e-75

92.76

Show/hide

Query:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE VCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+ GDASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV

A0A6J1G764 F-box protein SNE-like

6.8e-81

100

Show/hide

Query:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV
        SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV

A0A6J1I140 F-box protein SNE-like

6.8e-81

100

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Query:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV
        SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV
Subjt:  SEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

4.2e-11

34.78

Show/hide

Query:  DILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSP--LPSSVKSVVAALGGYKRLYMVSIRP-------VLSRLGYSEVVRRVWTQDEV
        D++ E+L+R +  +L  AACV R W  +A +E +WE  C R   +       +++VV +LGG++RL+ V IRP       V  + G  +   R+  +D+V
Subjt:  DILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSP--LPSSVKSVVAALGGYKRLYMVSIRP-------VLSRLGYSEVVRRVWTQDEV

Query:  QLSLSLFCVDYYERL
        QLSLSLF + +++ +
Subjt:  QLSLSLFCVDYYERL

Q9LUB6 F-box protein SNE

1.3e-36

55.19

Show/hide

Query:  IPEANEKRRK------FLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL
        + ++N KR++      F IND+ D+L+EIL+RLDG SL  AACVCRLW  +ARN+S+WE +CFR V SP PS S++SVV+ALGGY+ LY + IRPVL+RL
Subjt:  IPEANEKRRK------FLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL

Query:  GYSEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV
              + +WT+D++QLSLSL+CV YYERL   G   GDA   SL+FL   VNV
Subjt:  GYSEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV

Q9STX3 F-box protein GID2

1.3e-12

35.9

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Query:  NLD--ILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVVRRVWTQDEVQLS
        NLD  ++ E+LK +D  +L +++CV ++W   A++E +WE +C RH T+     + ++SVV ALGG++RL+ + + P LS+       R  + +DE++L+
Subjt:  NLD--ILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVVRRVWTQDEVQLS

Query:  LSLFCVDYYERLTGSGR
        LSL  + YYE+++ + R
Subjt:  LSLFCVDYYERLTGSGR

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

9.3e-14

35.9

Show/hide

Query:  NLD--ILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVVRRVWTQDEVQLS
        NLD  ++ E+LK +D  +L +++CV ++W   A++E +WE +C RH T+     + ++SVV ALGG++RL+ + + P LS+       R  + +DE++L+
Subjt:  NLD--ILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVVRRVWTQDEVQLS

Query:  LSLFCVDYYERLTGSGR
        LSL  + YYE+++ + R
Subjt:  LSLFCVDYYERLTGSGR

AT5G48170.1 F-box family protein

9.2e-38

55.19

Show/hide

Query:  IPEANEKRRK------FLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL
        + ++N KR++      F IND+ D+L+EIL+RLDG SL  AACVCRLW  +ARN+S+WE +CFR V SP PS S++SVV+ALGGY+ LY + IRPVL+RL
Subjt:  IPEANEKRRK------FLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL

Query:  GYSEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV
              + +WT+D++QLSLSL+CV YYERL   G   GDA   SL+FL   VNV
Subjt:  GYSEVVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCAGAAGAATCACATACCTGAGGCGAACGAGAAGCGGCGGAAGTTCTTAATCAACGACAATCTCGACATTCTCATCGAAATCCTCAAGCGGCTAGACGGACCGTCACT
CGGCGTCGCCGCCTGCGTCTGCCGCCTCTGGTGCACAATCGCTCGAAACGAATCAGTCTGGGAACATGTGTGCTTCCGGCACGTGACATCGCCGCTTCCGTCATCGGTGA
AATCAGTGGTCGCCGCACTGGGAGGGTACAAGCGGCTATACATGGTGAGCATAAGGCCGGTGCTGAGTCGACTCGGATACTCGGAAGTGGTGAGGCGAGTTTGGACTCAG
GACGAGGTTCAACTCTCACTGTCTCTGTTTTGTGTGGATTATTACGAACGGCTCACTGGGAGTGGAAGACTCAGCGGCGATGCGTCCGCATTGTCCCTCATGTTCCTCTG
CAACACCGTGAACGTCTGA

mRNA sequence

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Protein sequence

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MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVVRRVWTQ
DEVQLSLSLFCVDYYERLTGSGRLSGDASALSLMFLCNTVNV

Carg05152 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome