CuGenDBv2

Gene ID	Carg05318
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein trichome birefringence-like 14 isoform X2
Genome location	Carg_Chr07:4197454..4199439
RNA-Seq Expression	Carg05318
Synteny	Carg05318
Gene Ontology terms	GO:0009834 - plant-type secondary cell wall biogenesis (biological process) GO:0010411 - xyloglucan metabolic process (biological process) GO:0045492 - xylan biosynthetic process (biological process) GO:1990937 - xylan acetylation (biological process) GO:0005794 - Golgi apparatus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016407 - acetyltransferase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6595139.1 hypothetical protein SDJN03_11692, partial [Cucurbita argyrosperma subsp. sororia]

5.5e-54

100

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Query:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA
        MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA
Subjt:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA

Query:  STIILNRSQSNEN
        STIILNRSQSNEN
Subjt:  STIILNRSQSNEN

KAG7027153.1 hypothetical protein SDJN02_11164, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.2e-62

100

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Query:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA
        MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA
Subjt:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA

Query:  STIILNRSQSNENSNHMFALLDVKILD
        STIILNRSQSNENSNHMFALLDVKILD
Subjt:  STIILNRSQSNENSNHMFALLDVKILD

XP_022963357.1 protein trichome birefringence-like 14 isoform X1 [Cucurbita moschata]

2.7e-53

97.37

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Query:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA
        MKFRNNFPVRGKYLSFVVVALAFTVLVLWAW+ENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKE+TVKDSAHSEVTPTDFA
Subjt:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA

Query:  STIILNRSQSNENS
        STIILNRSQSNEN+
Subjt:  STIILNRSQSNENS

XP_022963358.1 protein trichome birefringence-like 14 isoform X2 [Cucurbita moschata]

2.7e-53

97.37

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Query:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA
        MKFRNNFPVRGKYLSFVVVALAFTVLVLWAW+ENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKE+TVKDSAHSEVTPTDFA
Subjt:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA

Query:  STIILNRSQSNENS
        STIILNRSQSNEN+
Subjt:  STIILNRSQSNENS

XP_023518186.1 protein trichome birefringence-like 14 [Cucurbita pepo subsp. pepo]

2.7e-53

97.37

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Query:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA
        MKFRNNFPVRGKYLSFVVVALAFTVLVLWAW+ENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKE+TVKDSAHSEVTPTDFA
Subjt:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA

Query:  STIILNRSQSNENS
        STIILNRSQSNEN+
Subjt:  STIILNRSQSNENS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1ECZ4 pentatricopeptide repeat-containing protein At2g21090-like isoform X3

1.3e-37

73.68

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Query:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA
        MK RNNFP RGK+ SFV+ ALAFT++VLWAW EN F++TSQSVQAWYRTSY+GF+VG T SS +P+T KENTEKTYSNSSTKE+TVKD AHSEVT T  A
Subjt:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA

Query:  STIILNRSQSNENS
        STI  NRS+S+EN+
Subjt:  STIILNRSQSNENS

A0A6J1EJM2 pentatricopeptide repeat-containing protein At2g21090-like isoform X1

2.0e-38

72.65

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Query:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA
        MK RNNFP RGK+ SFV+ ALAFT++VLWAW EN F++TSQSVQAWYRTSY+GF+VG T SS +P+T KENTEKTYSNSSTKE+TVKD AHSEVT T  A
Subjt:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA

Query:  STIILNRSQSNENSNHM
        STI  NRS+S+ENS ++
Subjt:  STIILNRSQSNENSNHM

A0A6J1HF28 protein trichome birefringence-like 14 isoform X1

1.3e-53

97.37

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Query:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA
        MKFRNNFPVRGKYLSFVVVALAFTVLVLWAW+ENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKE+TVKDSAHSEVTPTDFA
Subjt:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA

Query:  STIILNRSQSNENS
        STIILNRSQSNEN+
Subjt:  STIILNRSQSNENS

A0A6J1HHJ5 protein trichome birefringence-like 14 isoform X2

1.3e-53

97.37

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Query:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA
        MKFRNNFPVRGKYLSFVVVALAFTVLVLWAW+ENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKE+TVKDSAHSEVTPTDFA
Subjt:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA

Query:  STIILNRSQSNENS
        STIILNRSQSNEN+
Subjt:  STIILNRSQSNENS

A0A6J1KR85 protein trichome birefringence-like 14

9.5e-52

94.74

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Query:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA
        MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWE+NPFLSTSQSVQAWYRTSYAGFIVGPTNSS LPNTA ENTEKTYSNSSTKE+TVKDSAHSEVTPTDFA
Subjt:  MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFA

Query:  STIILNRSQSNENS
        STIILN+SQSNEN+
Subjt:  STIILNRSQSNENS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAATTCAGAAATAATTTCCCTGTAAGAGGGAAATATCTTTCTTTTGTCGTGGTTGCTCTTGCATTCACTGTCTTGGTGTTGTGGGCGTGGGAGGAAAATCCTTTTCT
TTCCACTTCTCAATCTGTTCAAGCATGGTATAGAACTTCTTATGCAGGATTCATTGTAGGTCCGACGAACAGTTCTGAATTACCTAACACAGCAAAGGAGAATACTGAAA
AAACATATTCAAATTCAAGTACAAAAGAAGACACAGTAAAAGATAGTGCACACTCAGAAGTTACACCCACAGACTTTGCATCCACAATAATTCTTAACAGGAGCCAGAGT
AATGAGAACAGTAATCATATGTTTGCTTTATTGGATGTAAAGATTCTTGATTAA

mRNA sequence

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Protein sequence

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MKFRNNFPVRGKYLSFVVVALAFTVLVLWAWEENPFLSTSQSVQAWYRTSYAGFIVGPTNSSELPNTAKENTEKTYSNSSTKEDTVKDSAHSEVTPTDFASTIILNRSQS
NENSNHMFALLDVKILD

Carg05318 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome