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Carg05340 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05340
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCOPII coat assembly protein SEC16, putative
Genome locationCarg_Chr07:4327271..4327756
RNA-Seq ExpressionCarg05340
SyntenyCarg05340
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595160.1 hypothetical protein SDJN03_11713, partial [Cucurbita argyrosperma subsp. sororia]3.6e-7498.76Show/hide
Query:  MADSAAPKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIRNRLV
        MADSAA KTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPA SGYEISIRNRLV
Subjt:  MADSAAPKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIRNRLV

Query:  KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
Subjt:  KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

KAG7027175.1 hypothetical protein SDJN02_11186, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-75100Show/hide
Query:  MADSAAPKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIRNRLV
        MADSAAPKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIRNRLV
Subjt:  MADSAAPKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIRNRLV

Query:  KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
Subjt:  KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

XP_022963126.1 uncharacterized protein LOC111463426 [Cucurbita moschata]5.7e-7297.52Show/hide
Query:  MADSAAPKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIRNRLV
        MADSAA KTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILP  SASAAAFNSPTAASPA SGYEISIRNRLV
Subjt:  MADSAAPKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIRNRLV

Query:  KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
Subjt:  KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

XP_022972767.1 uncharacterized protein LOC111471276 [Cucurbita maxima]2.2e-6893.17Show/hide
Query:  MADSAAPKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIRNRLV
        MADSAA +TYAAPSSPASIL+RRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSS QSYTSLKDILPS     AAFNSPTAASPA SGYEISIRNRLV
Subjt:  MADSAAPKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIRNRLV

Query:  KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        KQAAWAYLQPMSASSYSTGSN FHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
Subjt:  KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

XP_023518519.1 uncharacterized protein LOC111781995 [Cucurbita pepo subsp. pepo]8.2e-7195.09Show/hide
Query:  MADSAAPKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSAS--ASAAAFNSPTAASPAKSGYEISIRNR
        MADSAA KTYAAPSSPA ILSRRTSIPSSAIMPPPNVAVSPPLSSPID RILSSKSSSQSYTSLKDILPSAS  A+AAAFNSPTAASPA SGYEISIRNR
Subjt:  MADSAAPKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSAS--ASAAAFNSPTAASPAKSGYEISIRNR

Query:  LVKQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        LVKQAAWAYLQPMS SSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
Subjt:  LVKQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

TrEMBL top hitse value%identityAlignment
A0A0A0KHJ9 Uncharacterized protein8.9e-4773.91Show/hide
Query:  MADSAAPKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVS-PPLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIRNRL
        MA S+A  TY  PS     L R T +PSS  MPPPN AVS PP  SPI+L +LS KSSSQSYTSLKDILPSASASAAA NSPTAASPA S YEISIRNRL
Subjt:  MADSAAPKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVS-PPLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIRNRL

Query:  VKQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCIC
        VKQAAWAYLQPMSASSYS G NFFHRF LRFS  NPI +  GFIR SI+PAI+R  RFCIC
Subjt:  VKQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCIC

A0A6J1EDY2 uncharacterized protein LOC1114333196.4e-4573.33Show/hide
Query:  MADSAAPKTYAAPS---SPASILSRRTSIPSSAIMPPPNVAVSP-PLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIR
        MA SAA KTY  PS   SPA+ L RR+ IPSSA MPP N  +SP P  SPIDLR+L SKSSSQSYTSLKDILPS   SA A NSPTAASPA SGYEI IR
Subjt:  MADSAAPKTYAAPS---SPASILSRRTSIPSSAIMPPPNVAVSP-PLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIR

Query:  NRLVKQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        NRLVKQAAWAYLQPMSASSYS G N FH  WLRFS  NPI++ LGFIRG IIP+I+RV R CICL
Subjt:  NRLVKQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

A0A6J1HF81 uncharacterized protein LOC1114634262.8e-7297.52Show/hide
Query:  MADSAAPKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIRNRLV
        MADSAA KTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILP  SASAAAFNSPTAASPA SGYEISIRNRLV
Subjt:  MADSAAPKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIRNRLV

Query:  KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
Subjt:  KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

A0A6J1I5R0 uncharacterized protein LOC1114712761.1e-6893.17Show/hide
Query:  MADSAAPKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIRNRLV
        MADSAA +TYAAPSSPASIL+RRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSS QSYTSLKDILPS     AAFNSPTAASPA SGYEISIRNRLV
Subjt:  MADSAAPKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIRNRLV

Query:  KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        KQAAWAYLQPMSASSYSTGSN FHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
Subjt:  KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

A0A6J1IS66 uncharacterized protein LOC1114788203.4e-4673.94Show/hide
Query:  MADSAAPKTYAAPS---SPASILSRRTSIPSSAIMPPPNVAVSP-PLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIR
        MA SAA KTY  PS   SPA+ L RR+ IPSSA MPP N  +SP P  SPIDLR+L SKSSSQSYTSLKDILPS   SA A NSPTAASPA SGYEI IR
Subjt:  MADSAAPKTYAAPS---SPASILSRRTSIPSSAIMPPPNVAVSP-PLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIR

Query:  NRLVKQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        NRLVKQAAWAYLQPMSASSYS G N FHRFWLRFS  NPI++ LGFIRG IIP+I+RV R CIC+
Subjt:  NRLVKQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52520.1 unknown protein2.3e-0745.98Show/hide
Query:  LSSPIDLRILSSKSSSQS----YTSLKDILPSASASAAAFNSPTAASPAKSGYEISIRNRLVKQAAWAYLQPMSASSYSTGSNFFHR
        +S  +DL ++S   SS+     YTSLKDILPS+S +  +     A + A SG  I+IRNRLVKQAA +YLQP S  + S+  +F  R
Subjt:  LSSPIDLRILSSKSSSQS----YTSLKDILPSASASAAAFNSPTAASPAKSGYEISIRNRLVKQAAWAYLQPMSASSYSTGSNFFHR

AT5G06280.1 unknown protein1.3e-1042.19Show/hide
Query:  SPASILSRRTSIPSSAIMPPP----NVAVSPPLSSPIDLRILSSKSSS-QSYTSLKDILPS---ASASAAAFNSPTAASPAKSGYEISIRNRLVKQAAWA
        SPA+ L R  SI +   + PP    ++A +PP  S  D  ++S K SS  +YTSL+DI+ S   +S +  + N   +   + +  +ISIRNRLVKQAA +
Subjt:  SPASILSRRTSIPSSAIMPPP----NVAVSPPLSSPIDLRILSSKSSS-QSYTSLKDILPS---ASASAAAFNSPTAASPAKSGYEISIRNRLVKQAAWA

Query:  YLQP--MSASSYSTGSNFFHRFWLRFSA
        YLQP  +++S  S GS FF R WL  SA
Subjt:  YLQP--MSASSYSTGSNFFHRFWLRFSA

AT5G06280.3 unknown protein1.3e-1042.19Show/hide
Query:  SPASILSRRTSIPSSAIMPPP----NVAVSPPLSSPIDLRILSSKSSS-QSYTSLKDILPS---ASASAAAFNSPTAASPAKSGYEISIRNRLVKQAAWA
        SPA+ L R  SI +   + PP    ++A +PP  S  D  ++S K SS  +YTSL+DI+ S   +S +  + N   +   + +  +ISIRNRLVKQAA +
Subjt:  SPASILSRRTSIPSSAIMPPP----NVAVSPPLSSPIDLRILSSKSSS-QSYTSLKDILPS---ASASAAAFNSPTAASPAKSGYEISIRNRLVKQAAWA

Query:  YLQP--MSASSYSTGSNFFHRFWLRFSA
        YLQP  +++S  S GS FF R WL  SA
Subjt:  YLQP--MSASSYSTGSNFFHRFWLRFSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGATTCCGCCGCACCAAAAACCTATGCAGCGCCGTCGTCACCTGCCTCGATTCTCAGCCGCAGAACCTCGATTCCTTCCTCCGCTATCATGCCCCCACCAAACGT
CGCCGTTTCCCCTCCTCTGTCCTCTCCGATCGACTTGAGGATCCTCTCCTCCAAGTCCTCTTCTCAATCCTACACCTCTCTCAAGGACATCCTCCCCTCCGCCTCCGCCT
CCGCCGCCGCCTTCAACTCTCCCACTGCCGCATCTCCGGCCAAATCCGGCTACGAAATTTCCATCCGCAACCGCCTCGTTAAGCAAGCCGCTTGGGCTTATCTCCAACCT
ATGTCCGCTTCTTCCTATTCCACCGGCTCAAATTTCTTCCACCGTTTCTGGCTCCGATTCTCCGCCGCGAATCCGATCGCTAATAGTCTTGGATTCATCAGAGGTAGTAT
CATTCCCGCCATAGTCCGAGTCATTCGGTTCTGCATTTGCTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGATTCCGCCGCACCAAAAACCTATGCAGCGCCGTCGTCACCTGCCTCGATTCTCAGCCGCAGAACCTCGATTCCTTCCTCCGCTATCATGCCCCCACCAAACGT
CGCCGTTTCCCCTCCTCTGTCCTCTCCGATCGACTTGAGGATCCTCTCCTCCAAGTCCTCTTCTCAATCCTACACCTCTCTCAAGGACATCCTCCCCTCCGCCTCCGCCT
CCGCCGCCGCCTTCAACTCTCCCACTGCCGCATCTCCGGCCAAATCCGGCTACGAAATTTCCATCCGCAACCGCCTCGTTAAGCAAGCCGCTTGGGCTTATCTCCAACCT
ATGTCCGCTTCTTCCTATTCCACCGGCTCAAATTTCTTCCACCGTTTCTGGCTCCGATTCTCCGCCGCGAATCCGATCGCTAATAGTCTTGGATTCATCAGAGGTAGTAT
CATTCCCGCCATAGTCCGAGTCATTCGGTTCTGCATTTGCTTGTGA
Protein sequenceShow/hide protein sequence
MADSAAPKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASASAAAFNSPTAASPAKSGYEISIRNRLVKQAAWAYLQP
MSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL