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Carg05354 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05354
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionvacuolar protein sorting-associated protein 55 homolog
Genome locationCarg_Chr07:4392623..4397044
RNA-Seq ExpressionCarg05354
SyntenyCarg05354
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007262 - Vps55/LEPROT


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595172.1 Vacuolar protein sorting-associated protein 55-like protein, partial [Cucurbita argyrosperma subsp. sororia]3.3e-4398.9Show/hide
Query:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        L ALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
KAG7027189.1 Vacuolar protein sorting-associated protein 55-like protein [Cucurbita argyrosperma subsp. argyrosperma]7.0e-46100Show/hide
Query:  MTMTLEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        MTMTLEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  MTMTLEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
XP_022963366.1 vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita moschata]3.3e-4398.9Show/hide
Query:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        L ALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
XP_022963368.1 vacuolar protein sorting-associated protein 55 homolog isoform X2 [Cucurbita moschata]3.3e-4398.9Show/hide
Query:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        L ALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
XP_023518928.1 vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita pepo subsp. pepo]3.3e-4398.9Show/hide
Query:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        L ALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
TrEMBL top hitse value%identityAlignment
A0A6J1BUQ3 vacuolar protein sorting-associated protein 55 homolog isoform X37.9e-4397.8Show/hide
Query:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        L ALMYVLVPMPCLFFGGGSTQFL SRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
A0A6J1HFY6 vacuolar protein sorting-associated protein 55 homolog isoform X11.6e-4398.9Show/hide
Query:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        L ALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
A0A6J1HHK6 vacuolar protein sorting-associated protein 55 homolog isoform X21.6e-4398.9Show/hide
Query:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        L ALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
A0A6J1I9J0 vacuolar protein sorting-associated protein 55 homolog isoform X21.6e-4398.9Show/hide
Query:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        L ALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
A0A6J1ICF8 vacuolar protein sorting-associated protein 55 homolog isoform X11.6e-4398.9Show/hide
Query:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        L ALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
Subjt:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
SwissProt top hitse value%identityAlignment
Q9AST6 Vacuolar protein sorting-associated protein 55 homolog2.3e-1551.25Show/hide
Query:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL
        L  +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Subjt:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL
Arabidopsis top hitse value%identityAlignment
AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein1.6e-1651.25Show/hide
Query:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL
        L  +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Subjt:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL
AT1G32410.2 Vacuolar protein sorting 55 (VPS55) family protein1.6e-1651.25Show/hide
Query:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL
        L  +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Subjt:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL
AT1G32410.3 Vacuolar protein sorting 55 (VPS55) family protein1.6e-1651.25Show/hide
Query:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL
        L  +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++  S+ +F+  +L
Subjt:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVL
AT3G11530.1 Vacuolar protein sorting 55 (VPS55) family protein1.9e-4185.71Show/hide
Query:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        L ALMYV+VPMPC+FFGGGSTQFL SRDGGGWI AAKFLTGASTVGSLAIPIILRHA MI+TGAM IEF SFFIF+CTV+CFHR SL+DDW
Subjt:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
AT3G11530.2 Vacuolar protein sorting 55 (VPS55) family protein1.9e-4185.71Show/hide
Query:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        L ALMYV+VPMPC+FFGGGSTQFL SRDGGGWI AAKFLTGASTVGSLAIPIILRHA MI+TGAM IEF SFFIF+CTV+CFHR SL+DDW
Subjt:  LEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGATGACATTGGAAGCTTTGATGTATGTGCTTGTTCCAATGCCTTGTTTATTTTTCGGAGGTGGGTCGACGCAGTTTTTGACTAGTCGAGATGGCGGAGGATGGAT
CGGTGCTGCTAAATTCTTAACTGGAGCATCAACCGTGGGGAGTTTGGCAATTCCTATTATCCTCAGGCATGCTCATATGATCGACACAGGAGCCATGTTCATAGAATTCG
TTTCGTTCTTCATTTTTGTTTGCACCGTGTTGTGCTTCCACCGTGTTAGCCTTGAAGATGATTGGTGA
mRNA sequenceShow/hide mRNA sequence
TAAAAGTCCTTTGGCCAGAAGCTTAAATCTTGCCTTGTTCGTCGCGATCGGGGGCGAGAATCTTCACGGATCACTGCTGCAGGAACTTCTAGCTTGTTATTAATGACGAT
GACATTGGAAGCTTTGATGTATGTGCTTGTTCCAATGCCTTGTTTATTTTTCGGAGGTGGGTCGACGCAGTTTTTGACTAGTCGAGATGGCGGAGGATGGATCGGTGCTG
CTAAATTCTTAACTGGAGCATCAACCGTGGGGAGTTTGGCAATTCCTATTATCCTCAGGCATGCTCATATGATCGACACAGGAGCCATGTTCATAGAATTCGTTTCGTTC
TTCATTTTTGTTTGCACCGTGTTGTGCTTCCACCGTGTTAGCCTTGAAGATGATTGGTGATCCATTAGTGAAGCAGCAGATCAGTGCTATGATGAATGTAAAAACTTCCT
CTTTTGAATTTTATTGCGTGGTCTTCTTAACAGTTGATTCAAGACGATGTATAACAAGATGAAACTTAGCATTGAAAAAGGGAGATCGAGCTCGAAGTATCTTAGTTGTA
AATCAATCTAATGTATGATAATAGAAGTGCCCGTTTTCTTCCTTTTCTTTTCGCTTACGTTGAAATGCGCAACTCGAATCGCTGAAATAATTGTCGTTGAATGTGCTTTT
ATACAAATAAGTTAACACTTTTTTGTGT
Protein sequenceShow/hide protein sequence
MTMTLEALMYVLVPMPCLFFGGGSTQFLTSRDGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIDTGAMFIEFVSFFIFVCTVLCFHRVSLEDDW