CuGenDBv2

Gene ID	Carg05360
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Small nuclear ribonucleoprotein G
Genome location	Carg_Chr07:4433974..4435664
RNA-Seq Expression	Carg05360
Synteny	Carg05360
Gene Ontology terms	GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0005682 - U5 snRNP (cellular component) GO:0005685 - U1 snRNP (cellular component) GO:0005686 - U2 snRNP (cellular component) GO:0005687 - U4 snRNP (cellular component) GO:0005689 - U12-type spliceosomal complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0034719 - SMN-Sm protein complex (cellular component) GO:0043186 - P granule (cellular component) GO:0071004 - U2-type prespliceosome (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:0097526 - spliceosomal tri-snRNP complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR044641 - Sm-like protein Lsm7/SmG IPR034098 - Small nuclear ribonucleoprotein G IPR010920 - LSM domain superfamily IPR001163 - LSM domain, eukaryotic/archaea-type

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6595179.1 putative small nuclear ribonucleoprotein G, partial [Cucurbita argyrosperma subsp. sororia]

6.1e-35

100

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ

XP_004143329.1 probable small nuclear ribonucleoprotein G [Cucumis sativus]

4.0e-34

96.25

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKT+IGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ

XP_012468163.1 PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii]

1.5e-33

96.25

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIK+NANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMVVIRGNSVVTVEALEPV RMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ

XP_022962865.1 probable small nuclear ribonucleoprotein G [Cucurbita moschata]

6.1e-35

100

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ

XP_023517274.1 probable small nuclear ribonucleoprotein G [Cucurbita pepo subsp. pepo]

1.4e-34

98.75

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KHH9 Small nuclear ribonucleoprotein G

1.9e-34

96.25

Show/hide

Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKT+IGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ

A0A1S3CHS7 Small nuclear ribonucleoprotein G

1.9e-34

96.25

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKT+IGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ

A0A5D3C6A2 Small nuclear ribonucleoprotein G

1.9e-34

96.25

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKT+IGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ

A0A6J1HGA2 Small nuclear ribonucleoprotein G

3.0e-35

100

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ

A0A6J1I955 Small nuclear ribonucleoprotein G

3.0e-35

100

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ

SwissProt top hits

e value

%identity

Alignment

O82221 Probable small nuclear ribonucleoprotein G

4.1e-34

91.03

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNR
        MSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGN+KT+IGMVVIRGNS+VTVEALEPV R
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNR

P24715 Probable small nuclear ribonucleoprotein G

2.8e-30

86.84

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPV
        MS SGQPP LKKYMDK+LQI + ANR++VGTLRGFDQFMNLVVDNTVEVNGNEK +IGMVVIRGNSVVTVEALEPV
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPV

P62308 Small nuclear ribonucleoprotein G

3.0e-16

60.56

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Query:  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTEIGMVVIRGNSVVTVEALEPV
        PP+LKK+MDKKL +K+N  R V G LRGFD FMNLV+D  VE+    ++  IGMVVIRGNS++ +EALE V
Subjt:  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTEIGMVVIRGNSVVTVEALEPV

Q3ZBL0 Small nuclear ribonucleoprotein G

3.0e-16

60.56

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Query:  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTEIGMVVIRGNSVVTVEALEPV
        PP+LKK+MDKKL +K+N  R V G LRGFD FMNLV+D  VE+    ++  IGMVVIRGNS++ +EALE V
Subjt:  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTEIGMVVIRGNSVVTVEALEPV

Q9VXE0 Probable small nuclear ribonucleoprotein G

4.6e-17

61.97

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Query:  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTV-EVNGNEKTEIGMVVIRGNSVVTVEALEPV
        PP++KKYMDK++ +K+N  R V G LRGFD FMN+V+D+TV E   N K  IGMVVIRGNS+V VEAL+ V
Subjt:  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTV-EVNGNEKTEIGMVVIRGNSVVTVEALEPV

Arabidopsis top hits

e value

%identity

Alignment

AT2G03870.1 Small nuclear ribonucleoprotein family protein

8.9e-08

38.03

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Query:  DLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTEIGMVVIRGNSVVTV
        DL K++DK +Q+K+   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Subjt:  DLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTEIGMVVIRGNSVVTV

AT2G03870.2 Small nuclear ribonucleoprotein family protein

8.9e-08

38.03

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Query:  DLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTEIGMVVIRGNSVVTV
        DL K++DK +Q+K+   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Subjt:  DLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTEIGMVVIRGNSVVTV

AT2G23930.1 probable small nuclear ribonucleoprotein G

2.9e-35

91.03

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNR
        MSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGN+KT+IGMVVIRGNS+VTVEALEPV R
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNR

AT2G23930.2 probable small nuclear ribonucleoprotein G

2.9e-27

89.23

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Query:  MDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNR
        MDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGN+KT+IGMVVIRGNS+VTVEALEPV R
Subjt:  MDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNR

AT3G11500.1 Small nuclear ribonucleoprotein family protein

3.8e-35

91.03

Show/hide

Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNR
        MSRSGQPPDLKKYMDKKLQIK+NANR+VVGTLRGFDQFMNLVVDNTVEVNG++KT+IGMVVIRGNS+VTVEALEPV R
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNR

Sequences

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CDS sequence

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ATGAGTAGGTCGGGCCAGCCTCCAGATCTTAAAAAATACATGGACAAGAAGCTTCAGATAAAAATGAATGCTAATCGCTTGGTAGTTGGAACTCTTCGTGGGTTTGACCA
ATTTATGAATCTAGTCGTTGACAACACCGTGGAAGTGAACGGTAACGAGAAAACCGAAATCGGCATGGTGGTGATTAGGGGCAATAGCGTGGTAACCGTTGAAGCACTTG
AACCTGTAAACAGGATGCAG

mRNA sequence

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GATTAGGGTTTTTCCTTCCTCTGATCACTGTTCTACCAAAACCTCTTCTCATCTCTCGTTCTTCACCATGAGTAGGTCGGGCCAGCCTCCAGATCTTAAAAAATACATGG
ACAAGAAGCTTCAGATAAAAATGAATGCTAATCGCTTGGTAGTTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTCGTTGACAACACCGTGGAAGTGAACGGT
AACGAGAAAACCGAAATCGGCATGGTGGTGATTAGGGGCAATAGCGTGGTAACCGTTGAAGCACTTGAACCTGTAAACAGGATGCAG

Protein sequence

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MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVIRGNSVVTVEALEPVNRMQ

Carg05360 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome