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Carg05372 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05372
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLysM domain-containing protein
Genome locationCarg_Chr07:4488399..4488683
RNA-Seq ExpressionCarg05372
SyntenyCarg05372
Gene Ontology termsGO:0006811 - ion transport (biological process)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647420.1 hypothetical protein Csa_003059 [Cucumis sativus]2.8e-2363.16Show/hide
Query:  MAKRSS-------SRREFLVLVLVLSWWCVWCCNSQEVL-MGCDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHRF
        M KRSS       S+ + + LV+++    +WCC S E+L   C+EIYVV EGETLQSISEKCGDPFI E NPHIND DDVFPGLVIKITPF H F
Subjt:  MAKRSS-------SRREFLVLVLVLSWWCVWCCNSQEVL-MGCDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHRF

KAG5237812.1 cell wall macromolecule catabolic process [Salix suchowensis]5.6e-1960.67Show/hide
Query:  FLVLVLVLSWWCVWCCNSQEVLMG------------CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHRF
        F+ L+LVLS     CC   E  +             CDEIYVVREGETL SISEKCGDP+I E NPHI+D DDVFPGLVIKITPF+ RF
Subjt:  FLVLVLVLSWWCVWCCNSQEVLMG------------CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHRF

KAG6595189.1 hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sororia]5.2e-49100Show/hide
Query:  MAKRSSSRREFLVLVLVLSWWCVWCCNSQEVLMGCDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHRFLDGVRLG
        MAKRSSSRREFLVLVLVLSWWCVWCCNSQEVLMGCDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHRFLDGVRLG
Subjt:  MAKRSSSRREFLVLVLVLSWWCVWCCNSQEVLMGCDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHRFLDGVRLG

XP_019186406.1 PREDICTED: uncharacterized protein LOC109181107 [Ipomoea nil]9.5e-1951.35Show/hide
Query:  MAKRSSSRREFLVLVLVLSWWC---------VWCCNSQEVLMG----------------CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPG
        M+ R  S     VL   LSW+C         + CC S E                    CDEIYVVREGETL +IS+KCGDPFI E NPHI+D DDVFPG
Subjt:  MAKRSSSRREFLVLVLVLSWWC---------VWCCNSQEVLMG----------------CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPG

Query:  LVIKITPFLHR
        LVIKITPF HR
Subjt:  LVIKITPFLHR

XP_030927454.1 uncharacterized protein LOC115953797 [Quercus lobata]3.3e-1958.95Show/hide
Query:  FLVLVLVLSWWCVWCCNSQEVLMG-----------CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHRFLDGVRLG
        FL ++LVLS     CC S E               CDEIYVV EGETL +ISEKCGDP+I E NPHI+D DDVFPGLVIKITPF+ R L   RLG
Subjt:  FLVLVLVLSWWCVWCCNSQEVLMG-----------CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHRFLDGVRLG

TrEMBL top hitse value%identityAlignment
A0A1J6IY47 LysM domain-containing protein1.0e-1862.35Show/hide
Query:  FLVLVLVLSWWCVWCCNSQEVL------------MGCDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPF
        FL ++LVLSW+  +  N  E +            M CDEIYVVREGETLQ+ISEKCGDPFI E NPHI+D DDV+PGLVIKITPF
Subjt:  FLVLVLVLSWWCVWCCNSQEVL------------MGCDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPF

A0A1S4DFP9 uncharacterized protein LOC1078293276.0e-1962.35Show/hide
Query:  FLVLVLVLSWWCVWCCNSQEVL------------MGCDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPF
        FL ++LVLSW+  +  N  E +            M CDEIYVVREGETLQ+ISEKCGDPFI E NPHI+D DDVFPGL+IKITPF
Subjt:  FLVLVLVLSWWCVWCCNSQEVL------------MGCDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPF

A0A7J6W511 Peptidoglycan-binding LysM domain-containing protein4.6e-1963.95Show/hide
Query:  FLVLVLVLSWWCVWCCNSQE----VLMG------CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHR
        FL +VL+LS     CC+S E    V+M       CDEIYVV EGETL +ISEKCGDP+I E NPHIND DDVFPGLVIKITPF+ R
Subjt:  FLVLVLVLSWWCVWCCNSQE----VLMG------CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHR

A0A7J7HMC8 LysM domain-containing protein1.0e-1861.8Show/hide
Query:  FLVLVLVLSWWCVWCCNSQE-----------VLMG--CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHR
        FL L+LVLS+     C+S E           ++M   CDEIYVVREG+TLQ+I EKCGDPFI E NPHI+D DDVFPGLVIKITPFL+R
Subjt:  FLVLVLVLSWWCVWCCNSQE-----------VLMG--CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHR

A0A803MQG7 Uncharacterized protein6.0e-1971.43Show/hide
Query:  VLMGCDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHRFLDGVRL
        + M CDE+YVVREGETL SISEKCGDP+I E NPHIND DDVFPGLVIKITPF +R ++ + +
Subjt:  VLMGCDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHRFLDGVRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein6.5e-1876Show/hide
Query:  CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFL
        CDEIY V+EGETLQ+ISEKCGDP+I E NPHI+D DD+FPGL+I+ITP L
Subjt:  CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFL

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein2.8e-1676.09Show/hide
Query:  CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKI
        C+E+YVV EG+TL SISEKCGDPFI E NPHI+D DDVFPGL+IK+
Subjt:  CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein1.5e-1773.47Show/hide
Query:  CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPF
        C+EIY+V EGETL +I +KCGDPFI E NPHI+D DDVFPGLV+KI PF
Subjt:  CDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAGAGATCATCATCAAGGAGGGAGTTTTTGGTTCTGGTTTTGGTATTGAGCTGGTGGTGCGTATGGTGCTGCAACAGCCAAGAGGTATTGATGGGGTGTGATGA
GATATATGTCGTTCGTGAAGGAGAAACTTTGCAGAGCATTAGTGAAAAGTGTGGAGATCCTTTCATTTTTGAACACAATCCTCATATTAATGATGTTGATGATGTTTTTC
CTGGTTTGGTCATCAAGATCACTCCCTTTCTTCATCGTTTTCTCGATGGCGTTCGTCTCGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAGAGATCATCATCAAGGAGGGAGTTTTTGGTTCTGGTTTTGGTATTGAGCTGGTGGTGCGTATGGTGCTGCAACAGCCAAGAGGTATTGATGGGGTGTGATGA
GATATATGTCGTTCGTGAAGGAGAAACTTTGCAGAGCATTAGTGAAAAGTGTGGAGATCCTTTCATTTTTGAACACAATCCTCATATTAATGATGTTGATGATGTTTTTC
CTGGTTTGGTCATCAAGATCACTCCCTTTCTTCATCGTTTTCTCGATGGCGTTCGTCTCGGTTGA
Protein sequenceShow/hide protein sequence
MAKRSSSRREFLVLVLVLSWWCVWCCNSQEVLMGCDEIYVVREGETLQSISEKCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHRFLDGVRLG