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Carg05398 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05398
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein FAM98A-like isoform X1
Genome locationCarg_Chr19:1009109..1012134
RNA-Seq ExpressionCarg05398
SyntenyCarg05398
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571577.1 Protein SULFUR DEFICIENCY-INDUCED 1, partial [Cucurbita argyrosperma subsp. sororia]6.8e-27100Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
KAG7011318.1 hypothetical protein SDJN02_26222 [Cucurbita argyrosperma subsp. argyrosperma]1.6e-39100Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILKCGDDSTRLNDINYPVKSRTK
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILKCGDDSTRLNDINYPVKSRTK
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILKCGDDSTRLNDINYPVKSRTK
XP_022963612.1 protein FAM98A isoform X3 [Cucurbita moschata]6.8e-27100Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
XP_022967311.1 protein FAM98A-like isoform X1 [Cucurbita maxima]3.4e-2697.06Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
        MDRYQKVEKPKPESP+N+NEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
XP_023553962.1 protein argonaute 18-like isoform X1 [Cucurbita pepo subsp. pepo]6.8e-27100Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
TrEMBL top hitse value%identityAlignment
A0A5A7UHR2 Protein FAM98A-like isoform X18.1e-2695.59Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQ+KRVREIVLKAMGQAISK V+IAEILK
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
A0A5D3DWB1 Protein FAM98A-like isoform X18.1e-2695.59Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQ+KRVREIVLKAMGQAISK V+IAEILK
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
A0A6J1EY76 glycine-rich RNA-binding protein 10-like4.7e-2697.06Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK V+IAEILK
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
A0A6J1HFQ0 protein FAM98A isoform X33.3e-27100Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
        MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
A0A6J1HRM7 protein FAM98A-like isoform X11.6e-2697.06Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
        MDRYQKVEKPKPESP+N+NEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G20220.1 Alba DNA/RNA-binding protein7.2e-1961.76Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
        MD+YQ+VEKPK ++PI ENEIRITS G  RNYITYA  LLQ+ +  E++ KAMG+AI+K+V+I E++K
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
AT1G76010.1 Alba DNA/RNA-binding protein6.5e-2067.65Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
        MD+YQ+V KPK ++PI+ NEIRITSQG  RNYITYA TLLQDK   E+V KAMG+AI+KTV+I E++K
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
AT3G07030.1 Alba DNA/RNA-binding protein5.2e-2580.88Show/hide
Query:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK
        MDRYQ+V KPKPESPINENEIRITS+G IRNYI+YA++LLQ+K V++IVLKAMGQAISKTV+I+EILK
Subjt:  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGGTACCAGAAGGTGGAGAAGCCTAAACCTGAATCGCCGATAAACGAAAATGAAATCCGCATCACAAGTCAAGGCGCTATTCGAAACTACATCACTTATGCTTC
TACTCTACTTCAGGACAAACGTGTTAGAGAGATAGTGTTGAAAGCCATGGGGCAGGCAATCAGTAAAACAGTTTCCATTGCAGAAATTTTAAAGTGTGGAGATGACTCGA
CACGTCTCAATGATATCAATTACCCTGTCAAATCGAGAACTAAATAA
mRNA sequenceShow/hide mRNA sequence
CTCCTTTCCCCTTCCTCTTTCCTTTAGCTCAGAACCACACTCTCAAGCACTTCACTGTCAAGCTTTCTCCTCTTTCCCGTTAGGGTTTCTGTCTTCTTCTTCTTCGTCTT
CCTCTTCCCTCTCTCGCTTCCCGCCTTGCTGAAGAACCGCCATGGATAGGTACCAGAAGGTGGAGAAGCCTAAACCTGAATCGCCGATAAACGAAAATGAAATCCGCATC
ACAAGTCAAGGCGCTATTCGAAACTACATCACTTATGCTTCTACTCTACTTCAGGACAAACGTGTTAGAGAGATAGTGTTGAAAGCCATGGGGCAGGCAATCAGTAAAAC
AGTTTCCATTGCAGAAATTTTAAAGTGTGGAGATGACTCGACACGTCTCAATGATATCAATTACCCTGTCAAATCGAGAACTAAATAAAGATTCTCCTGGGTAAGATGTG
AAAGTCTAATCTG
Protein sequenceShow/hide protein sequence
MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILKCGDDSTRLNDINYPVKSRTK