; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg05404 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05404
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein LATE FLOWERING-like
Genome locationCarg_Chr19:947641..949721
RNA-Seq ExpressionCarg05404
SyntenyCarg05404
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571570.1 hypothetical protein SDJN03_28298, partial [Cucurbita argyrosperma subsp. sororia]1.3e-3588.64Show/hide
Query:  HPPSRHPPPPS-SSSSSSSLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRY-HHHHQYGVEDEQKI
        + PS  P P S SSSSSSSLFAATHHQTHHPGLYPHP+YIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRY HHHHQYGVEDEQK+
Subjt:  HPPSRHPPPPS-SSSSSSSLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRY-HHHHQYGVEDEQKI

KAG7011312.1 hypothetical protein SDJN02_26216, partial [Cucurbita argyrosperma subsp. argyrosperma]3.8e-56100Show/hide
Query:  MPTRKKEPPPERQSGCPITHPPSRHPPPPSSSSSSSSLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHQYGVE
        MPTRKKEPPPERQSGCPITHPPSRHPPPPSSSSSSSSLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHQYGVE
Subjt:  MPTRKKEPPPERQSGCPITHPPSRHPPPPSSSSSSSSLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHQYGVE

Query:  DEQKISL
        DEQKISL
Subjt:  DEQKISL

XP_022967643.1 protein LATE FLOWERING-like [Cucurbita maxima]7.2e-3173.27Show/hide
Query:  KKEPPPERQSGCPITHPPSRHPPPPSSSSSSSSLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHQYGVEDEQK
        KKE    R++     +  S  P P  SSSSSSS+FAATHHQTHHPGLYPHPMYI A+A NLHCFPNNPPLFYEHMGYYGG+CS+NRYHHHHQYGVEDEQ 
Subjt:  KKEPPPERQSGCPITHPPSRHPPPPSSSSSSSSLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHQYGVEDEQK

Query:  I
        +
Subjt:  I

XP_023511523.1 protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo]2.8e-2772Show/hide
Query:  KKEPPPERQSGCPITHPPSRHPPPPSSSSSSSSLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHQYGVEDEQK
        KKE    R++     + PS   P PSSSSSSSS+FAATHHQTHHPG YPHPMYI A+A NLHCFPNNPPLFYEH+GYY G+CS+NRY  HHQYGVEDEQK
Subjt:  KKEPPPERQSGCPITHPPSRHPPPPSSSSSSSSLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHQYGVEDEQK

XP_038888938.1 protein LATE FLOWERING [Benincasa hispida]5.7e-1250Show/hide
Query:  PPSRHPPPPSSSSSSSSLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHQYGVEDEQKIS
        PPS  P PP       SL     HQ HHPGL P P+YIA    NLHCFPNN  L YE+M Y GG+C++NRY   HQ G ++E  ++
Subjt:  PPSRHPPPPSSSSSSSSLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHQYGVEDEQKIS

TrEMBL top hitse value%identityAlignment
A0A0A0LE19 C2H2-type domain-containing protein1.1e-1150Show/hide
Query:  PPSSSSSSSSLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHQYGVEDEQKI
        PPS   + +SL  A   Q HHPGL PHP+YIA    NLHCFPNN  L YE+M + GG+C +NRYH   +  +  E+ I
Subjt:  PPSSSSSSSSLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHQYGVEDEQKI

A0A1S3BIU8 protein LATE FLOWERING-like1.8e-1151.9Show/hide
Query:  PPSSSSSSSSLFAATHHQTHHP-GLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHQYGVEDEQKI
        PPS  S+ +SL  A   Q HHP GL PHP+YIA    NLHCFPNN  L YE+M + GG+CS+NRYH   +  +  E+ I
Subjt:  PPSSSSSSSSLFAATHHQTHHP-GLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHQYGVEDEQKI

A0A5A7VIQ7 Protein LATE FLOWERING-like1.8e-1151.9Show/hide
Query:  PPSSSSSSSSLFAATHHQTHHP-GLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHQYGVEDEQKI
        PPS  S+ +SL  A   Q HHP GL PHP+YIA    NLHCFPNN  L YE+M + GG+CS+NRYH   +  +  E+ I
Subjt:  PPSSSSSSSSLFAATHHQTHHP-GLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHQYGVEDEQKI

A0A6J1HVN7 protein LATE FLOWERING-like3.5e-3173.27Show/hide
Query:  KKEPPPERQSGCPITHPPSRHPPPPSSSSSSSSLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHQYGVEDEQK
        KKE    R++     +  S  P P  SSSSSSS+FAATHHQTHHPGLYPHPMYI A+A NLHCFPNNPPLFYEHMGYYGG+CS+NRYHHHHQYGVEDEQ 
Subjt:  KKEPPPERQSGCPITHPPSRHPPPPSSSSSSSSLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHQYGVEDEQK

Query:  I
        +
Subjt:  I

A0A6J1K4H5 protein LATE FLOWERING-like5.2e-1152.27Show/hide
Query:  SSSSSSS---SLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEHMG---------YYGGLCSTNRYHHHHQYGVEDEQKI
        SSSS+SS   S+FA  + Q HHP + PHPMYIAA  PNLHCFPN+  +FY+ +G         YYGG+CS NRY    Q G EDE+ +
Subjt:  SSSSSSS---SLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEHMG---------YYGGLCSTNRYHHHHQYGVEDEQKI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCACAAGAAAGAAAGAACCGCCGCCCGAAAGGCAAAGCGGATGTCCGATTACGCACCCTCCGAGTCGCCATCCCCCTCCTCCCTCCTCCTCCTCCTCCTCCTCCTC
GCTCTTTGCAGCTACCCACCACCAAACGCATCATCCAGGGCTATACCCACATCCAATGTACATTGCTGCTAGTGCTCCTAATCTTCATTGTTTCCCCAATAATCCACCTT
TGTTCTATGAACACATGGGGTACTATGGTGGCCTTTGTTCAACCAATAGATATCATCATCATCATCAATATGGGGTGGAAGATGAACAGAAGATCTCACTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCACAAGAAAGAAAGAACCGCCGCCCGAAAGGCAAAGCGGATGTCCGATTACGCACCCTCCGAGTCGCCATCCCCCTCCTCCCTCCTCCTCCTCCTCCTCCTCCTC
GCTCTTTGCAGCTACCCACCACCAAACGCATCATCCAGGGCTATACCCACATCCAATGTACATTGCTGCTAGTGCTCCTAATCTTCATTGTTTCCCCAATAATCCACCTT
TGTTCTATGAACACATGGGGTACTATGGTGGCCTTTGTTCAACCAATAGATATCATCATCATCATCAATATGGGGTGGAAGATGAACAGAAGATCTCACTTTAA
Protein sequenceShow/hide protein sequence
MPTRKKEPPPERQSGCPITHPPSRHPPPPSSSSSSSSLFAATHHQTHHPGLYPHPMYIAASAPNLHCFPNNPPLFYEHMGYYGGLCSTNRYHHHHQYGVEDEQKISL