; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg05417 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05417
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionphotosystem II D1 precursor processing protein PSB27-H2, chloroplastic
Genome locationCarg_Chr17:1292935..1294702
RNA-Seq ExpressionCarg05417
SyntenyCarg05417
Gene Ontology termsGO:0010206 - photosystem II repair (biological process)
GO:0010207 - photosystem II assembly (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domainsIPR025585 - Photosystem II Pbs27
IPR038450 - Photosystem II Pbs27 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013554.1 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]4.2e-89100Show/hide
Query:  MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTKS
        MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTKS
Subjt:  MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTKS

Query:  GKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSYQVKNRHCSS
        GKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSYQVKNRHCSS
Subjt:  GKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSYQVKNRHCSS

XP_022138383.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordica charantia]5.9e-6782.32Show/hide
Query:  MTAFIQAKICPATISTLDRI-SSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTK
        M AF+QAKICP T S+LDRI  SENG KLRSRSQVVLPSQE+CRR LLCNGMS V FL FNN   PLLARAEE PNDK+EE+NGV+G IKS+FDPNERTK
Subjt:  MTAFIQAKICPATISTLDRI-SSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTK

Query:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSY
        SGKVLPKAYLKSARE+VKTLRES+QED KDGAKFRRTADAAKESIRDYL NWLGQQ V QE SY
Subjt:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSY

XP_022958810.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita moschata]1.7e-8298.18Show/hide
Query:  MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTKS
        MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKS+FDPNERTKS
Subjt:  MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTKS

Query:  GKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSYQV
        GKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQE SY V
Subjt:  GKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSYQV

XP_023006140.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita maxima]2.2e-7793.33Show/hide
Query:  MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTKS
        MTAFIQAKICPATIST DRISSENGHKLRS SQVVLPSQELCRR LLCNGMS VAFLTFNNALTP LARAEE PN KEEEENGVIGTIKS+FDPNERTKS
Subjt:  MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTKS

Query:  GKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSYQV
        GKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAV+QE SY V
Subjt:  GKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSYQV

XP_023549108.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita pepo subsp. pepo]1.2e-8096.36Show/hide
Query:  MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTKS
        MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRR+LLCNGMS VAFLTFNNALTPLLARAEEMPND EEEENGVIGTIKS+FDPNERTKS
Subjt:  MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTKS

Query:  GKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSYQV
        GKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQE SY V
Subjt:  GKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSYQV

TrEMBL top hitse value%identityAlignment
A0A1S3BG68 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic1.4e-6682.53Show/hide
Query:  MTAFIQAKICPATISTLDR-ISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTK
        M AFIQAKICP TISTLDR + SENG KL SRSQV LPSQE+CRR L+ NGMS V FLTFNN LTP  A AEEMPN+ EEE+NGVIGTIKS+FDPNERTK
Subjt:  MTAFIQAKICPATISTLDR-ISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTK

Query:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSYQV
        SGKVLPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYL NWLG+Q +VQE SY V
Subjt:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSYQV

A0A5D3D0K6 Photosystem II D1 processing protein PSB27-H25.4e-6681.93Show/hide
Query:  MTAFIQAKICPATISTLDR-ISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTK
        M AFIQAKICP TI TLDR + SENG KL SRSQV LPSQE+CRR L+ NGMS V FLTFNN LTP  A AEEMPN+ EEE+NGVIGTIKS+FDPNERTK
Subjt:  MTAFIQAKICPATISTLDR-ISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTK

Query:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSYQV
        SGKVLPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYL NWLG+Q +VQE SY V
Subjt:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSYQV

A0A6J1CCV0 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic2.8e-6782.32Show/hide
Query:  MTAFIQAKICPATISTLDRI-SSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTK
        M AF+QAKICP T S+LDRI  SENG KLRSRSQVVLPSQE+CRR LLCNGMS V FL FNN   PLLARAEE PNDK+EE+NGV+G IKS+FDPNERTK
Subjt:  MTAFIQAKICPATISTLDRI-SSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTK

Query:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSY
        SGKVLPKAYLKSARE+VKTLRES+QED KDGAKFRRTADAAKESIRDYL NWLGQQ V QE SY
Subjt:  SGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSY

A0A6J1H448 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic8.2e-8398.18Show/hide
Query:  MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTKS
        MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKS+FDPNERTKS
Subjt:  MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTKS

Query:  GKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSYQV
        GKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQE SY V
Subjt:  GKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSYQV

A0A6J1KWY8 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic1.0e-7793.33Show/hide
Query:  MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTKS
        MTAFIQAKICPATIST DRISSENGHKLRS SQVVLPSQELCRR LLCNGMS VAFLTFNNALTP LARAEE PN KEEEENGVIGTIKS+FDPNERTKS
Subjt:  MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTKS

Query:  GKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSYQV
        GKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAV+QE SY V
Subjt:  GKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSYQV

SwissProt top hitse value%identityAlignment
Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic7.8e-3064.29Show/hide
Query:  SFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNW
        SF+A + F+     L A+A E   +K +E  GV+G  K++FDPNERTKSGK LPKAYLKSAREVVKT+RESL+E+ KD AKFRR+ADAAKESIRDYL NW
Subjt:  SFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNW

Query:  LGQQAVVQEVSY
         GQ+ V  E SY
Subjt:  LGQQAVVQEVSY

Arabidopsis top hitse value%identityAlignment
AT1G05385.1 photosystem II 11 kDa protein-related5.5e-3164.29Show/hide
Query:  SFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNW
        SF+A + F+     L A+A E   +K +E  GV+G  K++FDPNERTKSGK LPKAYLKSAREVVKT+RESL+E+ KD AKFRR+ADAAKESIRDYL NW
Subjt:  SFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNW

Query:  LGQQAVVQEVSY
         GQ+ V  E SY
Subjt:  LGQQAVVQEVSY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGCATTTATTCAAGCGAAGATCTGCCCTGCAACTATTTCAACGTTGGATAGAATCTCAAGTGAAAATGGGCATAAACTGCGATCCAGGTCTCAAGTTGTGCTACC
ATCTCAAGAACTTTGCAGGCGTGATTTATTGTGTAATGGCATGTCATTTGTTGCCTTTCTCACGTTCAACAATGCATTGACACCATTGTTGGCTCGGGCCGAAGAAATGC
CAAATGACAAGGAGGAAGAGGAAAATGGAGTCATCGGGACGATCAAATCAATGTTCGATCCAAATGAGAGAACCAAATCTGGGAAGGTATTGCCCAAGGCTTACCTGAAG
TCAGCAAGGGAGGTGGTGAAGACGCTGCGTGAGTCATTACAGGAAGACTCCAAGGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCCATTAGAGACTA
TTTAGGCAATTGGTTGGGGCAACAAGCAGTTGTTCAAGAGGTATCTTATCAAGTGAAAAATAGACATTGTAGTTCATGA
mRNA sequenceShow/hide mRNA sequence
CAAATCCCAATTCGCTCTGTACCAAGAGATTGACGCGAAGCCGCTCTCTGCATATCCACAAGTAAGAACTCGAAGTTCATTTCCAAACCCAAATTCATCCTCTTTCAATT
CATTTGTAACATTTTTCTTCCACCGATTCTTCGCTGGTGCGCAACTTCGTACAATGCCGGCACAAAGTTAACGATTAGGGGAATTGCTGGGGGATGAAGCAGGTGTATAG
CGGCTCAACTTGGCTGGAGTAATAATCAAGAACGAAGATGACTGCATTTATTCAAGCGAAGATCTGCCCTGCAACTATTTCAACGTTGGATAGAATCTCAAGTGAAAATG
GGCATAAACTGCGATCCAGGTCTCAAGTTGTGCTACCATCTCAAGAACTTTGCAGGCGTGATTTATTGTGTAATGGCATGTCATTTGTTGCCTTTCTCACGTTCAACAAT
GCATTGACACCATTGTTGGCTCGGGCCGAAGAAATGCCAAATGACAAGGAGGAAGAGGAAAATGGAGTCATCGGGACGATCAAATCAATGTTCGATCCAAATGAGAGAAC
CAAATCTGGGAAGGTATTGCCCAAGGCTTACCTGAAGTCAGCAAGGGAGGTGGTGAAGACGCTGCGTGAGTCATTACAGGAAGACTCCAAGGATGGTGCTAAATTTAGAC
GAACTGCAGATGCTGCAAAAGAATCCATTAGAGACTATTTAGGCAATTGGTTGGGGCAACAAGCAGTTGTTCAAGAGGTATCTTATCAAGTGAAAAATAGACATTGTAGT
TCATGATGATCGTAATGAATCTATAATAACATTTTCACTTACTCACATGCAGGAATCTTACGCTGTGCTAGAGAAAGCAATAAGGTCATTGGCAGGTTTTTATGCAAAGG
CTGGGCCATCTGCACCATTGCCGGAAGATGTTAAATCTGATATACTGAATGATTTGGATAAGGCTGAAGAATTCTTGTAATTGATGAGCATTTGAGCTCTAGATTAATAT
TTTTTGAGGTATGTAGCATGTTAGGAATCACGACCGATCTCCACAATGGTATGATATTTTCCACTTTAAACAGTTCCCATAGATTTGCTTTCGATTTCTCTAAAAGACCT
CATATTGATAGAAATGTATTCCTTACTTATAAATCCATGATCAACCCTTAATTTATTAAACCGACAGGACTCCTCTCCCAACAATTTT
Protein sequenceShow/hide protein sequence
MTAFIQAKICPATISTLDRISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTFNNALTPLLARAEEMPNDKEEEENGVIGTIKSMFDPNERTKSGKVLPKAYLK
SAREVVKTLRESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEVSYQVKNRHCSS