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Carg05466 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05466
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAP-5 complex subunit mu-like
Genome locationCarg_Chr17:1608559..1611717
RNA-Seq ExpressionCarg05466
SyntenyCarg05466
Gene Ontology termsGO:0016197 - endosomal transport (biological process)
GO:0005764 - lysosome (cellular component)
GO:0005770 - late endosome (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0030119 - AP-type membrane coat adaptor complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013601.1 AP-5 complex subunit mu, partial [Cucurbita argyrosperma subsp. argyrosperma]8.2e-41100Show/hide
Query:  EADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKSQCAPACSVLITVHAEKLFGTL
        EADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKSQCAPACSVLITVHAEKLFGTL
Subjt:  EADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKSQCAPACSVLITVHAEKLFGTL
XP_008458532.1 PREDICTED: AP-5 complex subunit mu [Cucumis melo]1.3e-2289.55Show/hide
Query:  EADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
        E DSD+E ESAS+VV+IEEFLMEKMSKD LPPVELEEPFCWQAYNYAKVSFKILGASLSGISV PKS
Subjt:  EADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
XP_022958862.1 AP-5 complex subunit mu-like [Cucurbita moschata]3.4e-2695.52Show/hide
Query:  ADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKSQ
        ADSDIE ESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISV PKS+
Subjt:  ADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKSQ
XP_023000243.1 AP-5 complex subunit mu [Cucurbita maxima]1.7e-2288.06Show/hide
Query:  EADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
        E DSD+E+ESAS+VV+IEEFLMEKMSKD LPPVELEEPFCWQAYNYAKVSFKILGASLSG+SV PKS
Subjt:  EADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
XP_023515067.1 AP-5 complex subunit mu [Cucurbita pepo subsp. pepo]1.7e-2288.06Show/hide
Query:  EADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
        E DSD+E+ESAS+VV+IEEFLMEKMSKD LPPVELEEPFCWQAYNYAKVSFKILGASLSG+SV PKS
Subjt:  EADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
TrEMBL top hitse value%identityAlignment
A0A1S3C825 AP-5 complex subunit mu6.4e-2389.55Show/hide
Query:  EADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
        E DSD+E ESAS+VV+IEEFLMEKMSKD LPPVELEEPFCWQAYNYAKVSFKILGASLSGISV PKS
Subjt:  EADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
A0A5A7SVG1 AP-5 complex subunit mu6.4e-2389.55Show/hide
Query:  EADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
        E DSD+E ESAS+VV+IEEFLMEKMSKD LPPVELEEPFCWQAYNYAKVSFKILGASLSGISV PKS
Subjt:  EADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
A0A6J1EQE7 AP-5 complex subunit mu isoform X18.4e-2388.06Show/hide
Query:  EADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
        E DSD+E+ESAS+VV+IEEFLMEKMSKD LPPVELEEPFCWQAYNYAKVSFKILGASLSG+SV PKS
Subjt:  EADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
A0A6J1H302 AP-5 complex subunit mu-like1.6e-2695.52Show/hide
Query:  ADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKSQ
        ADSDIE ESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISV PKS+
Subjt:  ADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKSQ
A0A6J1KM34 AP-5 complex subunit mu8.4e-2388.06Show/hide
Query:  EADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
        E DSD+E+ESAS+VV+IEEFLMEKMSKD LPPVELEEPFCWQAYNYAKVSFKILGASLSG+SV PKS
Subjt:  EADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
SwissProt top hitse value%identityAlignment
Q8W0Z6 AP-5 complex subunit mu2.5e-1664.62Show/hide
Query:  DSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
        D + E ESA +VV++E+FL++KM+KD LP  ELEEPFCWQAY+YAKVSFKI+GAS+S +S+  KS
Subjt:  DSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
Arabidopsis top hitse value%identityAlignment
AT2G20790.1 clathrin adaptor complexes medium subunit family protein1.8e-1764.62Show/hide
Query:  DSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
        D + E ESA +VV++E+FL++KM+KD LP  ELEEPFCWQAY+YAKVSFKI+GAS+S +S+  KS
Subjt:  DSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
AT2G20790.2 clathrin adaptor complexes medium subunit family protein1.8e-1764.62Show/hide
Query:  DSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
        D + E ESA +VV++E+FL++KM+KD LP  ELEEPFCWQAY+YAKVSFKI+GAS+S +S+  KS
Subjt:  DSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKS
AT2G20790.3 clathrin adaptor complexes medium subunit family protein1.5e-1160.78Show/hide
Query:  DSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKI
        D + E ESA +VV++E+FL++KM+KD LP  ELEEPFCWQAY+YAKV   +
Subjt:  DSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGGCAGATAGTGATATCGAGACTGAGAGCGCAAGCGATGTGGTCAGTATTGAGGAATTTTTAATGGAGAAAATGAGTAAGGATCATCTTCCTCCAGTCGAACTAGAGGA
GCCATTTTGCTGGCAGGCATACAATTATGCGAAGGTATCCTTCAAGATTTTAGGGGCATCATTATCAGGAATATCTGTCCATCCTAAATCTCAGTGTGCACCTGCTTGTT
CTGTTCTCATTACAGTGCATGCAGAGAAGCTTTTTGGTACCCTCTAA
mRNA sequenceShow/hide mRNA sequence
GAGGCAGATAGTGATATCGAGACTGAGAGCGCAAGCGATGTGGTCAGTATTGAGGAATTTTTAATGGAGAAAATGAGTAAGGATCATCTTCCTCCAGTCGAACTAGAGGA
GCCATTTTGCTGGCAGGCATACAATTATGCGAAGGTATCCTTCAAGATTTTAGGGGCATCATTATCAGGAATATCTGTCCATCCTAAATCTCAGTGTGCACCTGCTTGTT
CTGTTCTCATTACAGTGCATGCAGAGAAGCTTTTTGGTACCCTCTAATTGCACTTGTCTGCCTGGTTGGTCATCTGGTGCCCCTCACAATCAGCCTCTGGCCTTCTTAAG
GTACGCCTCGGTACACTTATAAATCCTATAGACTTCTTCGTCTGTCTCCAAGCCGGCCATAATAGAATAGATAGG
Protein sequenceShow/hide protein sequence
EADSDIETESASDVVSIEEFLMEKMSKDHLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVHPKSQCAPACSVLITVHAEKLFGTL