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Carg05478 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05478
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L33-like
Genome locationCarg_Chr17:1678618..1681281
RNA-Seq ExpressionCarg05478
SyntenyCarg05478
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0009536 - plastid (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR001705 - Ribosomal protein L33
IPR011332 - Zinc-binding ribosomal protein
IPR038584 - Ribosomal protein L33 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575038.1 hypothetical protein SDJN03_25677, partial [Cucurbita argyrosperma subsp. sororia]2.6e-23100Show/hide
Query:  EMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        EMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  EMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
KAG7013613.1 rpmG, partial [Cucurbita argyrosperma subsp. argyrosperma]8.5e-27100Show/hide
Query:  MLKVASEEMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MLKVASEEMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MLKVASEEMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
XP_004135554.1 uncharacterized protein LOC101212288 [Cucumis sativus]9.8e-23100Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
XP_007223555.1 uncharacterized protein LOC18791548 [Prunus persica]1.1e-2194.74Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKAT+FIRLVSAAGTGFFYVKRKPTK+TEKLEFRK+DPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
XP_022137876.1 uncharacterized protein LOC111009198 [Momordica charantia]1.7e-2298.25Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK+TEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
TrEMBL top hitse value%identityAlignment
A0A0A0LVW9 Uncharacterized protein4.7e-23100Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
A0A1S3BBV4 50S ribosomal protein L33-like4.7e-23100Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
A0A6J1CA39 uncharacterized protein LOC1110095994.7e-23100Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
A0A6J1H6A1 uncharacterized protein LOC1114599914.7e-23100Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
A0A6J1KVU2 uncharacterized protein LOC1114991574.7e-23100Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
SwissProt top hitse value%identityAlignment
A8GY80 50S ribosomal protein L338.9e-1162.96Show/hide
Query:  KKKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        KK   + +RLVS AGTGFF V KR P   TEKL FRKYDP+V +HVLF E K+K
Subjt:  KKKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
B3CRY6 50S ribosomal protein L338.9e-1161.11Show/hide
Query:  KKKATMFIRLVSAAGTGFFYVK-RKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        +KK  + ++LVS+AGTG F+VK R P   TEKL FRKYDP+V +HV FTEAK+K
Subjt:  KKKATMFIRLVSAAGTGFFYVK-RKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
B6IN38 50S ribosomal protein L338.1e-1266.04Show/hide
Query:  KKATMFIRLVSAAGTGFFYVKRK-PTKITEKLEFRKYDPRVNRHVLFTEAKMK
        K+ T+ I+LVS+A TGFFYVK+K P K TEKLEF+KYDP   +HV+F EAKMK
Subjt:  KKATMFIRLVSAAGTGFFYVKRK-PTKITEKLEFRKYDPRVNRHVLFTEAKMK
Q1RGQ4 50S ribosomal protein L338.9e-1162.96Show/hide
Query:  KKKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        KK   + +RLVS AGTGFF V KR P   TEKL FRKYDP+V +HVLF E K+K
Subjt:  KKKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Q2W1A2 50S ribosomal protein L334.7e-1267.92Show/hide
Query:  KKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        K AT+ I+L+S AGTGFFYV K+ P K TEKLEFRKYDP V +HV F EAK+K
Subjt:  KKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Arabidopsis top hitse value%identityAlignment
AT3G06320.1 Ribosomal protein L33 family protein2.6e-2186.21Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDK+KK  MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK
AT5G18790.1 Ribosomal protein L33 family protein2.6e-2186.21Show/hide
Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDK+KK  MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAAGGTCGCTTCAGAAGAAATGGGTGACAAGAAAAAGAAAGCTACAATGTTTATACGACTCGTATCAGCTGCTGGGACTGGATTCTTCTACGTCAAACGAAAGCC
AACCAAAATAACAGAGAAGCTCGAGTTCCGAAAATACGATCCTCGGGTCAATCGACATGTCTTGTTTACAGAAGCGAAAATGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAAGGTCGCTTCAGAAGAAATGGGTGACAAGAAAAAGAAAGCTACAATGTTTATACGACTCGTATCAGCTGCTGGGACTGGATTCTTCTACGTCAAACGAAAGCC
AACCAAAATAACAGAGAAGCTCGAGTTCCGAAAATACGATCCTCGGGTCAATCGACATGTCTTGTTTACAGAAGCGAAAATGAAGTGAAAGAAGGGAAGGAAGAAAAGAC
CATCCTTTTAACTTGGACCTATTCTTCTTCCAAATGTTTAGACTCATGTTTCACGTTGCTAGTCTCTCCCGTGGCTCATCAAATCATGATTTTTGTGCATCAAATTCTAT
AGCTACGAATCGTTTGCCCCTTGATATCTTCTAGTCAGCTCTCTCTACTCATCTATTAAGCTTCTAGCAACTTAGACTTTTGACTCTTAATGGTTAATAAATTTCGAGTT
TCATGTCTATTTATTCTCTAAATTTTTAAATGGGTCTAATATATTTTGAATTTTATTTCT
Protein sequenceShow/hide protein sequence
MLKVASEEMGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK