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Carg05486 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05486
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionclassical arabinogalactan protein 25-like
Genome locationCarg_Chr17:1730038..1730406
RNA-Seq ExpressionCarg05486
SyntenyCarg05486
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR039346 - Classical arabinogalactan protein 25/26


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575045.1 hypothetical protein SDJN03_25684, partial [Cucurbita argyrosperma subsp. sororia]1.1e-56100Show/hide
Query:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSLP
        MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSLP
Subjt:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSLP

Query:  PYSNSLLLLTALSLHAFYLHLH
        PYSNSLLLLTALSLHAFYLHLH
Subjt:  PYSNSLLLLTALSLHAFYLHLH

XP_008458497.1 PREDICTED: classical arabinogalactan protein 25 [Cucumis melo]5.7e-4079.84Show/hide
Query:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASG-SIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSL
        MASFWYC+AVIM FMASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+G SIPTIPSNPSPPNPD+FEA GPDSSALSP GLPGSFA P SL
Subjt:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASG-SIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSL

Query:  PPYSN-SLLLLTALSLHAFYLHLH
        P YSN  LLLL  L+L AF +HLH
Subjt:  PPYSN-SLLLLTALSLHAFYLHLH

XP_022958905.1 classical arabinogalactan protein 25-like [Cucurbita moschata]2.1e-5598.36Show/hide
Query:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSLP
        MASFWYCAAVIMA MASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPK LP
Subjt:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSLP

Query:  PYSNSLLLLTALSLHAFYLHLH
        PYSNSLLLLTALSLHAFYLHLH
Subjt:  PYSNSLLLLTALSLHAFYLHLH

XP_023006472.1 classical arabinogalactan protein 25-like [Cucurbita maxima]3.8e-5294.26Show/hide
Query:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSLP
        MASFWYCAAVIMAFMASPLLALPSLPNPKLS SFQELSPDIAPLLPS+GG+IPSA+GSIPTIPSNPSPPNPDEFEAPGPDSSALSP GLPGSFAAPK LP
Subjt:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSLP

Query:  PYSNSLLLLTALSLHAFYLHLH
        PYSNS LLLTALSLHAFYLHLH
Subjt:  PYSNSLLLLTALSLHAFYLHLH

XP_023547783.1 classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo]1.3e-5598.36Show/hide
Query:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSLP
        MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSP GLPGSFAAPK LP
Subjt:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSLP

Query:  PYSNSLLLLTALSLHAFYLHLH
        PYSNSLLLLTALSLHAFYLHLH
Subjt:  PYSNSLLLLTALSLHAFYLHLH

TrEMBL top hitse value%identityAlignment
A0A0A0KBF8 Uncharacterized protein8.0e-4079.03Show/hide
Query:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASG-SIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSL
        MASFWYC+AVIM FMASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+G SIPTIPSNPSPPNPD+FEA GPDSSALSP GLPGSFA P SL
Subjt:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASG-SIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSL

Query:  PPYSN-SLLLLTALSLHAFYLHLH
        P YSN  LLLL  L+L  F +HLH
Subjt:  PPYSN-SLLLLTALSLHAFYLHLH

A0A1S3C8K2 classical arabinogalactan protein 252.7e-4079.84Show/hide
Query:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASG-SIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSL
        MASFWYC+AVIM FMASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+G SIPTIPSNPSPPNPD+FEA GPDSSALSP GLPGSFA P SL
Subjt:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASG-SIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSL

Query:  PPYSN-SLLLLTALSLHAFYLHLH
        P YSN  LLLL  L+L AF +HLH
Subjt:  PPYSN-SLLLLTALSLHAFYLHLH

A0A5A7SSC0 Classical arabinogalactan protein 252.7e-4079.84Show/hide
Query:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASG-SIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSL
        MASFWYC+AVIM FMASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+G SIPTIPSNPSPPNPD+FEA GPDSSALSP GLPGSFA P SL
Subjt:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASG-SIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSL

Query:  PPYSN-SLLLLTALSLHAFYLHLH
        P YSN  LLLL  L+L AF +HLH
Subjt:  PPYSN-SLLLLTALSLHAFYLHLH

A0A6J1H4T0 classical arabinogalactan protein 25-like1.0e-5598.36Show/hide
Query:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSLP
        MASFWYCAAVIMA MASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPK LP
Subjt:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSLP

Query:  PYSNSLLLLTALSLHAFYLHLH
        PYSNSLLLLTALSLHAFYLHLH
Subjt:  PYSNSLLLLTALSLHAFYLHLH

A0A6J1KVY5 classical arabinogalactan protein 25-like1.8e-5294.26Show/hide
Query:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSLP
        MASFWYCAAVIMAFMASPLLALPSLPNPKLS SFQELSPDIAPLLPS+GG+IPSA+GSIPTIPSNPSPPNPDEFEAPGPDSSALSP GLPGSFAAPK LP
Subjt:  MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSLP

Query:  PYSNSLLLLTALSLHAFYLHLH
        PYSNS LLLTALSLHAFYLHLH
Subjt:  PYSNSLLLLTALSLHAFYLHLH

SwissProt top hitse value%identityAlignment
Q6NN00 Classical arabinogalactan protein 253.0e-0747.83Show/hide
Query:  SSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLP--GSFAAPKSLPPYSNSLLLLTALSLHAFYLHL
        S  Q+LSP+IAPLLPS G ++PS  GS  TIPS+PSPP+PD  +   PD  A SP   P   S + P SLP  S  +LL++ +   A +L L
Subjt:  SSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLP--GSFAAPKSLPPYSNSLLLLTALSLHAFYLHL

Arabidopsis top hitse value%identityAlignment
AT5G18690.1 arabinogalactan protein 252.1e-0847.83Show/hide
Query:  SSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLP--GSFAAPKSLPPYSNSLLLLTALSLHAFYLHL
        S  Q+LSP+IAPLLPS G ++PS  GS  TIPS+PSPP+PD  +   PD  A SP   P   S + P SLP  S  +LL++ +   A +L L
Subjt:  SSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLP--GSFAAPKSLPPYSNSLLLLTALSLHAFYLHL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCCTTTTGGTATTGTGCAGCAGTCATTATGGCATTCATGGCCTCACCTTTGCTTGCTTTACCATCTCTACCCAATCCAAAACTCAGCTCCTCTTTTCAAGAACT
CTCCCCTGATATTGCTCCATTATTGCCTTCTTCAGGCGGTAGCATTCCTTCTGCATCTGGATCGATTCCCACCATTCCTTCCAACCCCAGCCCTCCAAATCCAGACGAGT
TCGAGGCTCCTGGTCCTGATTCCTCTGCCCTTTCCCCACTTGGGCTACCAGGTTCCTTCGCAGCCCCTAAATCCCTGCCTCCCTATTCAAATTCCCTTCTTCTTCTCACT
GCCCTATCTCTTCATGCCTTCTATCTGCACTTACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCCTTTTGGTATTGTGCAGCAGTCATTATGGCATTCATGGCCTCACCTTTGCTTGCTTTACCATCTCTACCCAATCCAAAACTCAGCTCCTCTTTTCAAGAACT
CTCCCCTGATATTGCTCCATTATTGCCTTCTTCAGGCGGTAGCATTCCTTCTGCATCTGGATCGATTCCCACCATTCCTTCCAACCCCAGCCCTCCAAATCCAGACGAGT
TCGAGGCTCCTGGTCCTGATTCCTCTGCCCTTTCCCCACTTGGGCTACCAGGTTCCTTCGCAGCCCCTAAATCCCTGCCTCCCTATTCAAATTCCCTTCTTCTTCTCACT
GCCCTATCTCTTCATGCCTTCTATCTGCACTTACATTGA
Protein sequenceShow/hide protein sequence
MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKSLPPYSNSLLLLT
ALSLHAFYLHLH