; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg05488 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05488
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTubby-like F-box protein
Genome locationCarg_Chr17:1737428..1740876
RNA-Seq ExpressionCarg05488
SyntenyCarg05488
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575047.1 Tubby-like F-box protein 3, partial [Cucurbita argyrosperma subsp. sororia]2.6e-46100Show/hide
Query:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
        MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
Subjt:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ

KAG7013623.1 Tubby-like F-box protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-93100Show/hide
Query:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQVS
        MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQVS
Subjt:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQVS

Query:  EYFALVVNLADFRYIWYGFELIGNLNVVAIMMCFTLKTWSKGSYCTVFHKAKQLQSDLSSLPQFDKWLVIYMLN
        EYFALVVNLADFRYIWYGFELIGNLNVVAIMMCFTLKTWSKGSYCTVFHKAKQLQSDLSSLPQFDKWLVIYMLN
Subjt:  EYFALVVNLADFRYIWYGFELIGNLNVVAIMMCFTLKTWSKGSYCTVFHKAKQLQSDLSSLPQFDKWLVIYMLN

XP_022959037.1 tubby-like F-box protein 3 [Cucurbita moschata]2.4e-4495.92Show/hide
Query:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
        MSLKRFFLDM SRSRPVVQDSSAPEPRDDME SGWANMPSELLRDIFMRIEESEASWPLR+SVVACAGVCRSWR+ISKEIVLTLEVSGRLTFPISLKQ
Subjt:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ

XP_023006224.1 tubby-like F-box protein 3 [Cucurbita maxima]5.4e-4495.92Show/hide
Query:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
        MSLK FFLDMRSRSRPVVQDSSAPEPRDD+E SGWANMPSELLRDIFMRIEESEA WPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
Subjt:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ

XP_023547699.1 tubby-like F-box protein 3 [Cucurbita pepo subsp. pepo]2.2e-4597.96Show/hide
Query:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
        MSLKRFFLDMRSRSRPVVQDSSAPEPRDD+E SGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
Subjt:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ

TrEMBL top hitse value%identityAlignment
A0A0A0KCR9 Uncharacterized protein1.3e-3275.51Show/hide
Query:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
        MSLK  F DMRSRSR VVQD+SAP P D ++QS WANMP ELLR++ MRIE SE SWP RKSVVACAGVCRSWR I+KEIV T E+SGRLTFPIS+KQ
Subjt:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ

A0A1S3C7G9 Tubby-like F-box protein6.1e-3376.53Show/hide
Query:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
        MSLK  F DMRSRSR VVQD+SAP P D ++QS WANMP ELLR++ MRIE SE SWP RKSVVACAGVCRSWR I+KEIV T EVSGRLTFPIS+KQ
Subjt:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ

A0A5A7SVJ4 Tubby-like F-box protein6.1e-3376.53Show/hide
Query:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
        MSLK  F DMRSRSR VVQD+SAP P D ++QS WANMP ELLR++ MRIE SE SWP RKSVVACAGVCRSWR I+KEIV T EVSGRLTFPIS+KQ
Subjt:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ

A0A6J1H3G5 tubby-like F-box protein 31.2e-4495.92Show/hide
Query:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
        MSLKRFFLDM SRSRPVVQDSSAPEPRDDME SGWANMPSELLRDIFMRIEESEASWPLR+SVVACAGVCRSWR+ISKEIVLTLEVSGRLTFPISLKQ
Subjt:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ

A0A6J1L1K1 tubby-like F-box protein 32.6e-4495.92Show/hide
Query:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
        MSLK FFLDMRSRSRPVVQDSSAPEPRDD+E SGWANMPSELLRDIFMRIEESEA WPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
Subjt:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ

SwissProt top hitse value%identityAlignment
Q10LG8 Tubby-like F-box protein 68.7e-2169.57Show/hide
Query:  MEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
        M+QS WA +P ELLR++ +RIEESE  WP R+ VVACAGVCRSWR I+KEIV   E SG+LTFPISLKQ
Subjt:  MEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ

Q6NPQ1 Tubby-like F-box protein 111.3e-1946.85Show/hide
Query:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSG----WANMPSELLRDIFMRIEESE-ASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPIS
        M+L+   L+MRSR   VV D +A    D    S     W+ +P ELLR+I +R+E ++   WP R+SVVACAGVCR WR++  E V+  E+S +LTFPIS
Subjt:  MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSG----WANMPSELLRDIFMRIEESE-ASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPIS

Query:  LKQVSEYFALV
        LKQ     +LV
Subjt:  LKQVSEYFALV

Q6Z2G9 Tubby-like F-box protein 54.3e-2056.25Show/hide
Query:  QDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
        Q           +Q  WAN+P ELL D+  R+E SEA+WP R+ VVACA VCRSWR ++KE+V TLE  GR+TFPISLKQ
Subjt:  QDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ

Q8VY21 Tubby-like F-box protein 32.2e-2462.5Show/hide
Query:  RSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQVSEYFALV
        RSRS+ VVQD+S P   D  +QS WA+MP ELLRD+ MRIE+SE +WP RK+VV+CAGVCR+WR I KEIV   E+S +LTFPISLKQ     +LV
Subjt:  RSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQVSEYFALV

Q9ZP59 Tubby-like F-box protein 16.7e-2155.81Show/hide
Query:  RSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
        +SR  VQDS   +    ++++ WAN+P ELLRD+  R+EESE+ WP R+ VVACA VCRSWR + KEIV + E+SG++TFP+SLKQ
Subjt:  RSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ

Arabidopsis top hitse value%identityAlignment
AT1G76900.1 tubby like protein 14.8e-2255.81Show/hide
Query:  RSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
        +SR  VQDS   +    ++++ WAN+P ELLRD+  R+EESE+ WP R+ VVACA VCRSWR + KEIV + E+SG++TFP+SLKQ
Subjt:  RSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ

AT1G76900.2 tubby like protein 14.8e-2255.81Show/hide
Query:  RSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ
        +SR  VQDS   +    ++++ WAN+P ELLRD+  R+EESE+ WP R+ VVACA VCRSWR + KEIV + E+SG++TFP+SLKQ
Subjt:  RSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQ

AT2G47900.1 tubby like protein 31.6e-2562.5Show/hide
Query:  RSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQVSEYFALV
        RSRS+ VVQD+S P   D  +QS WA+MP ELLRD+ MRIE+SE +WP RK+VV+CAGVCR+WR I KEIV   E+S +LTFPISLKQ     +LV
Subjt:  RSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQVSEYFALV

AT2G47900.2 tubby like protein 31.6e-2562.5Show/hide
Query:  RSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQVSEYFALV
        RSRS+ VVQD+S P   D  +QS WA+MP ELLRD+ MRIE+SE +WP RK+VV+CAGVCR+WR I KEIV   E+S +LTFPISLKQ     +LV
Subjt:  RSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQVSEYFALV

AT2G47900.3 tubby like protein 31.6e-2562.5Show/hide
Query:  RSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQVSEYFALV
        RSRS+ VVQD+S P   D  +QS WA+MP ELLRD+ MRIE+SE +WP RK+VV+CAGVCR+WR I KEIV   E+S +LTFPISLKQ     +LV
Subjt:  RSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQVSEYFALV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCTCAAGAGGTTCTTTCTAGATATGAGGTCCCGCTCCCGCCCTGTGGTGCAGGACAGCTCCGCTCCGGAGCCGAGGGACGACATGGAACAAAGCGGTTGGGCCAA
TATGCCTTCGGAGCTTCTCAGGGATATTTTTATGAGAATCGAGGAGTCGGAGGCCTCATGGCCGCTGAGGAAAAGTGTCGTCGCTTGCGCCGGAGTTTGTCGGAGCTGGC
GAATCATTTCTAAGGAGATCGTCCTAACGCTGGAGGTTTCCGGCAGGTTGACATTCCCAATCTCTCTCAAGCAGGTGAGTGAGTATTTCGCGCTTGTTGTTAATTTGGCG
GATTTTAGGTATATTTGGTATGGTTTTGAACTGATTGGAAATTTGAATGTTGTTGCTATAATGATGTGTTTTACTCTTAAGACCTGGTCCAAGGGATCATATTGTACGGT
GTTTCATAAAGCGAAACAGCTCCAATCAGACCTATCATCTCTTCCTCAATTTGACAAATGGTTAGTGATTTATATGCTAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCTCAAGAGGTTCTTTCTAGATATGAGGTCCCGCTCCCGCCCTGTGGTGCAGGACAGCTCCGCTCCGGAGCCGAGGGACGACATGGAACAAAGCGGTTGGGCCAA
TATGCCTTCGGAGCTTCTCAGGGATATTTTTATGAGAATCGAGGAGTCGGAGGCCTCATGGCCGCTGAGGAAAAGTGTCGTCGCTTGCGCCGGAGTTTGTCGGAGCTGGC
GAATCATTTCTAAGGAGATCGTCCTAACGCTGGAGGTTTCCGGCAGGTTGACATTCCCAATCTCTCTCAAGCAGGTGAGTGAGTATTTCGCGCTTGTTGTTAATTTGGCG
GATTTTAGGTATATTTGGTATGGTTTTGAACTGATTGGAAATTTGAATGTTGTTGCTATAATGATGTGTTTTACTCTTAAGACCTGGTCCAAGGGATCATATTGTACGGT
GTTTCATAAAGCGAAACAGCTCCAATCAGACCTATCATCTCTTCCTCAATTTGACAAATGGTTAGTGATTTATATGCTAAATTGAGGTTAAGCTAGGAATTGCGACTCTC
CACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCGTGGCTTTGCTTTGGGCTTCTCCAAAAGGCCTCATTCCAACAGAGATAGGATTCCTCACT
TATAAACCCATGATCTTCCACTAAATTAACCAACGTGGGACTCAACTCCCAATAATCCTCAAAAGCTTTGTCTGAATGGTTCATTTCTTAATCACAGCACTAACTGAGGA
TGGTAAATTTTTACTTGCTGCTCATAAATGGAAGCGCCCGACCTACACGGATTACGATATCTCGTTGTGTGCTGAGGATTCGTCGAAGGGGAGCGACACCATTGTTGGGA
AATTGAGATCTAATTTCCTAGGAACCAAGTTCACAATCTTCGATAAGCAACCGCCACATTCCGAAGCCAAGATCACGAAAAGTACGAAAAGCACGAAAAGCACGCAAGGT
CTCTCCTCAAGGCCAGTGCATCTGAATGAAGTTTCATCCAATGTCCCTTCAGGAAACTACCCTGTTGCTCACATTTCATATGAACTAAATGTGTTGGGATCAAGGGGTCC
GAGGAGAATGCAGTGTGTCATGGACGCCATTCCCGCTTCTGCGGTTGAACCTGGAGGAGTTGCTCCCACGCTGGCCGAGCTTTCTTTGAGGAATATCGAATTGATTCCAT
CATTCCCTTTTTGGAGGTTGAATTCAGATACGGATAGCTTGATGTCTAAACCTTTGGACAGTCAGGAAGATGGAATATTGATGCTGAGAAACAAAACTCCCCGGTGGCAC
GAGCGGCTTCAATGCTGGTGTTTAAACTTCCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTTCAACTAGTCGCGTCTAGGGAAGACGAACAACCTACAGACGATCA
TGACACGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGGTTTATTCACAATGGATTATCGTTACCCGATCTCCGCTTTCCTGGCTTTCGCAATCTGCCTCAGCAGCATTG
ACACCAAGATTGCTTGTGAATGATAGACATATCATTTAACAGGGAAGGGATGCTCAGTTTGAAGGTCCACGAATGGCTTCTGGCAATAAAATCGTTCATAAATGGTTCTT
GAAGACTTTTTATTTGATTATGATGTGAATATTTCTCCCAGTTTGTGTAAATAGTGATTTTTTATTTTTTATTTTTCAATTGAAGAAGTTGAATGGTAGTGGTTGACCGT
TGAAATCAGCTATTCATTTTCGTTCCTTTAGGGTA
Protein sequenceShow/hide protein sequence
MSLKRFFLDMRSRSRPVVQDSSAPEPRDDMEQSGWANMPSELLRDIFMRIEESEASWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQVSEYFALVVNLA
DFRYIWYGFELIGNLNVVAIMMCFTLKTWSKGSYCTVFHKAKQLQSDLSSLPQFDKWLVIYMLN