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Carg05501 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05501
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S21
Genome locationCarg_Chr17:1840726..1842764
RNA-Seq ExpressionCarg05501
SyntenyCarg05501
Gene Ontology termsGO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001931 - Ribosomal protein S21e
IPR018279 - Ribosomal protein S21e, conserved site
IPR038579 - Ribosomal protein S21e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575063.1 40S ribosomal protein S21-2, partial [Cucurbita argyrosperma subsp. sororia]7.2e-39100Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

XP_022930553.1 40S ribosomal protein S21-2-like [Cucurbita moschata]1.2e-3898.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSA+DRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

XP_022959408.1 40S ribosomal protein S21-2 isoform X1 [Cucurbita moschata]7.2e-39100Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

XP_022959410.1 40S ribosomal protein S21-2 isoform X2 [Cucurbita moschata]7.2e-39100Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

XP_023006434.1 40S ribosomal protein S21-2 [Cucurbita maxima]2.7e-3898.77Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVE+RQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ

TrEMBL top hitse value%identityAlignment
A0A6J1EVJ7 40S ribosomal protein S215.9e-3998.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSA+DRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

A0A6J1H674 40S ribosomal protein S213.5e-39100Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

A0A6J1H7Z5 40S ribosomal protein S21-2 isoform X13.5e-39100Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

A0A6J1KDN2 40S ribosomal protein S215.9e-3998.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSA+DRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

A0A6J1L257 40S ribosomal protein S211.3e-3898.77Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVE+RQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ

SwissProt top hitse value%identityAlignment
P35687 40S ribosomal protein S214.2e-3476.83Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQIN+GH+DENG+Y G+F+TFAL G+IRAQGDADSA+DRLWQK+K EV+QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

Q3E902 40S ribosomal protein S21-24.1e-3783.95Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+N+GHLD NG+YTGQF+TFALCG++RAQGDADS +DRLWQKKKVE +Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ

Q41852 40S ribosomal protein S213.6e-3375.31Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ
        MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQIN+GHLD NG+Y G F+TFAL G++RAQGDADS++DRLWQKKK E++Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ

Q9M337 40S ribosomal protein S21-15.9e-3679.27Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+N+GHLD NG+YTGQF+TFALCG++RAQGDADS +DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

Q9SMI2 40S ribosomal protein S218.0e-2566.67Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDEN-GIYTGQFSTFALCGYIRAQGDADSAIDRLWQK
        MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQINVGH+D N G+YTG ++TFALCG++R+ G++D+A++RL  K
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDEN-GIYTGQFSTFALCGYIRAQGDADSAIDRLWQK

Arabidopsis top hitse value%identityAlignment
AT3G53890.1 Ribosomal protein S21e4.2e-3779.27Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+N+GHLD NG+YTGQF+TFALCG++RAQGDADS +DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

AT3G53890.2 Ribosomal protein S21e4.2e-3779.27Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+N+GHLD NG+YTGQF+TFALCG++RAQGDADS +DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

AT5G27700.1 Ribosomal protein S21e2.9e-3883.95Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+N+GHLD NG+YTGQF+TFALCG++RAQGDADS +DRLWQKKKVE +Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAACGAAGAAGGAAAGATCACTGAGCTCTACATTCCTAGGAAATGCTCTGCGACGAACCGACTTATCACCTCTAAGGACCACGCTTCGGTTCAGATTAATGTTGG
TCACTTGGATGAGAATGGCATCTACACAGGCCAATTCTCCACTTTCGCACTCTGCGGTTACATCCGTGCTCAGGGAGATGCGGACAGTGCTATAGACAGGTTATGGCAGA
AGAAGAAAGTTGAAGTTCGCCAACAGTAG
mRNA sequenceShow/hide mRNA sequence
AACCCTAGTTTTCGTCCTTCGAACTGCCCACTCGCAGCAGTTGGCCGACTGGTTTTTAGCATCGGAGCCAATATGCAGAACGAAGAAGGAAAGATCACTGAGCTCTACAT
TCCTAGGAAATGCTCTGCGACGAACCGACTTATCACCTCTAAGGACCACGCTTCGGTTCAGATTAATGTTGGTCACTTGGATGAGAATGGCATCTACACAGGCCAATTCT
CCACTTTCGCACTCTGCGGTTACATCCGTGCTCAGGGAGATGCGGACAGTGCTATAGACAGGTTATGGCAGAAGAAGAAAGTTGAAGTTCGCCAACAGTAGAAGTTTCTA
AATTTATTTCCATTTGAGTTTTTAGTTAATTGCGAATTATGGATGTTTTGAATTCCTTTGGTAACCTTTTGATGAACACGTTTATAAAGTTCTAGTGTTTGTTGAAATGT
TCTTTTATGAAACCTGAATTTTGATCACTCATTAATTGATTCATGTTCGTACTTTTCATCAATATCGTTTTATTATAGTAATTTTTTTCTTCACTCTTTTCATTACAGTT
TTTCCTTTGAATCAGACGTTAGTTTAGGAATAAATTTTATAATTGGCGCTGCATAGGATCCGTCTGTTTCTTCATTTTATATAAATTCGT
Protein sequenceShow/hide protein sequence
MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ