CuGenDBv2

Gene ID	Carg05520
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	glycine-rich protein
Genome location	Carg_Chr17:1958652..1959254
RNA-Seq Expression	Carg05520
Synteny	Carg05520
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575084.1 hypothetical protein SDJN03_25723, partial [Cucurbita argyrosperma subsp. sororia]

2.9e-102

100

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Query:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS
        MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS
Subjt:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS

Query:  EGDEDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC
        EGDEDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC
Subjt:  EGDEDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC

XP_022959163.1 uncharacterized protein LOC111460236 [Cucurbita moschata]

1.8e-99

97.5

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Query:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS
        MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYS SATDSITDQIPPSS AGALQLSAALFPVATIAPPPVKSISCRSSSR FLRRKRRTKRRLYSGDDS
Subjt:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS

Query:  EGDEDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC
        EG EDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLF+RLISVC
Subjt:  EGDEDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC

XP_023006205.1 uncharacterized protein LOC111499005 [Cucurbita maxima]

3.7e-97

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Query:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS
        MDTSLVAGTLS+VANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSS AGALQLS ALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYS DDS
Subjt:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS

Query:  EGDEDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC
        EG EDNGFD GDFDGPYGGDGGGGGGRGWNFDRF G+DWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC
Subjt:  EGDEDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC

XP_023548774.1 uncharacterized protein LOC111807330 [Cucurbita pepo subsp. pepo]

1.2e-98

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Query:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS
        MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSS AGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYS DDS
Subjt:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS

Query:  EGDEDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC
        EG EDNGFDGGDFDGPYGGDGGGGGGRGWNFDRF GSDWDESSSSSTSLNPAYYFVYEV+CWIALSNCVHFAFKKVVRFAAEAIGNSERVKLF RLISVC
Subjt:  EGDEDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC

XP_038874866.1 uncharacterized protein LOC120067363 [Benincasa hispida]

5.0e-86

86.5

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Query:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS
        MD+SLVAGTLSMVANNG+GFAKFLNRLD +SNY ISATDS+TDQI PSS AGALQLSAALFP+ATIAPPPVKS+S RS+SRTFLRRKRRTKRRLYSG DS
Subjt:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS

Query:  EGDEDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC
        EG ED+GF GGDFDGPYGGDG  GGGRGWNFDRF G+DWDESSSSS+S NPAYYFVYEVVCWIALSNCVHFAFKKVVRFA EA+GNSER K+ MRLISVC
Subjt:  EGDEDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KG90 Uncharacterized protein

1.0e-84

87.06

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Query:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS
        MD+SLVAGTLSMVANN +GFAK LNRLD +SNY IS TDSITDQIPPSS A AL+LSAALFPVATIAPPPVKS+S RS+SRTFLRRKRRTKRRLYS DDS
Subjt:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS

Query:  EGDEDNGFDGGDFDGPYGGDGGG-GGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISV
        EG ED+GF GGDFDGP GGDGGG GGGRGWNFDRF G+DWDESSSSS+S NPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSER KL MRLISV
Subjt:  EGDEDNGFDGGDFDGPYGGDGGG-GGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISV

Query:  C
        C
Subjt:  C

A0A1S3C7S8 uncharacterized protein LOC103497828

1.5e-83

86.07

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Query:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS
        MD+SLVAGTLSMVANN +GFAK LNRLD +SNY ISATDSITDQIP SS A +L+LSAALFPVATIAPPPVKS+S RS+SRTFLRRKRRTKRRLYS DDS
Subjt:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS

Query:  EGDEDNGFDGGDFDGPYGGD-GGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISV
        EG ED+GF GGDFDGPYGGD GGGGGGRGWNFDRF G+DWDESS SS+S NPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEA GNSER KL MRLISV
Subjt:  EGDEDNGFDGGDFDGPYGGD-GGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISV

Query:  C
        C
Subjt:  C

A0A6J1CBL0 uncharacterized protein LOC111009719

1.6e-82

85.5

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Query:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS
        MD+SLVAGTLSM ANNG+GFAKFLNRLD +SNY +SA+DSIT+QIPPSS AGALQLSAALFPVATIAPPPVKSIS RS+SRTFLRRKRRTKRRLYS DDS
Subjt:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS

Query:  EGDEDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC
        EG ED+GF G +FDG YGG GGGG GRGWNFDRF G+DWDESSSSS+  NPAYYFVYEVVCWIALSNCVHFAFKKVVRFAA+AIGNSER KL MRLISVC
Subjt:  EGDEDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC

A0A6J1H560 uncharacterized protein LOC111460236

8.6e-100

97.5

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Query:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS
        MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYS SATDSITDQIPPSS AGALQLSAALFPVATIAPPPVKSISCRSSSR FLRRKRRTKRRLYSGDDS
Subjt:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS

Query:  EGDEDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC
        EG EDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLF+RLISVC
Subjt:  EGDEDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC

A0A6J1KZI4 uncharacterized protein LOC111499005

1.8e-97

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Query:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS
        MDTSLVAGTLS+VANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSS AGALQLS ALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYS DDS
Subjt:  MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDS

Query:  EGDEDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC
        EG EDNGFD GDFDGPYGGDGGGGGGRGWNFDRF G+DWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC
Subjt:  EGDEDNGFDGGDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G06780.1 glycine-rich protein

3.2e-30

47.17

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Query:  MDTSLVAGTLSM-VANNGVGFAK-FLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGD
        M+ SL+A T+++  A  G+ F K  L RLD+ ++  IS  DS+ D   P    G +Q SA +FPV  IAPPPV+S S ++  R  +R+KRRT+R  + GD
Subjt:  MDTSLVAGTLSM-VANNGVGFAK-FLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGD

Query:  -DSEGDEDNGFDGGDF---DGPYGGDGGG--GGGRGWNF----DRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSE
         D  GD       GDF   DGP+G  GGG  GGG+GWN+      F   +WD SS SS S +PA  FVYEV+CWIALSNCVHFAFK++VR     + + E
Subjt:  -DSEGDEDNGFDGGDF---DGPYGGDGGG--GGGRGWNF----DRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSE

Query:  RVKLFMRLISVC
        R KL + L  VC
Subjt:  RVKLFMRLISVC

Sequences

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CDS sequence

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ATGGATACCTCTCTGGTCGCCGGAACGCTTTCAATGGTCGCCAACAACGGCGTCGGGTTCGCTAAATTCCTCAATCGCCTCGATATCCTATCCAATTACAGTATCTCCGC
TACCGATTCAATCACCGACCAGATCCCACCGTCTTCCGTCGCTGGAGCTCTTCAATTATCGGCCGCTCTGTTCCCCGTCGCAACCATTGCTCCGCCACCTGTCAAATCGA
TTTCGTGCCGATCGTCCTCTCGGACGTTTCTCCGTAGAAAACGACGCACGAAGCGTAGATTGTACAGCGGCGATGATTCCGAGGGCGACGAGGATAATGGATTCGACGGC
GGCGATTTTGACGGACCGTACGGTGGAGATGGCGGCGGAGGCGGCGGTAGGGGTTGGAATTTCGATAGATTTGAGGGGAGTGATTGGGACGAATCATCGTCTTCTTCTAC
ATCTTTGAATCCTGCGTATTATTTCGTTTACGAAGTGGTTTGTTGGATCGCGCTCTCGAACTGTGTGCATTTTGCGTTCAAGAAGGTTGTTAGATTTGCAGCTGAAGCAA
TTGGGAACTCCGAAAGGGTAAAATTGTTCATGAGATTGATCTCTGTTTGTTGA

mRNA sequence

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Protein sequence

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MDTSLVAGTLSMVANNGVGFAKFLNRLDILSNYSISATDSITDQIPPSSVAGALQLSAALFPVATIAPPPVKSISCRSSSRTFLRRKRRTKRRLYSGDDSEGDEDNGFDG
GDFDGPYGGDGGGGGGRGWNFDRFEGSDWDESSSSSTSLNPAYYFVYEVVCWIALSNCVHFAFKKVVRFAAEAIGNSERVKLFMRLISVC

Carg05520 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome