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Carg05539 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05539
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L29
Genome locationCarg_Chr17:2086432..2089667
RNA-Seq ExpressionCarg05539
SyntenyCarg05539
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002673 - Ribosomal protein L29e


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3599276.1 hypothetical protein F2Q69_00039071 [Brassica cretica]2.2e-2551.83Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMD---------PKF------------LRNQ-----------------RYAKKHNNKSGE-------
        MAKSKNHTAHNQS KAH+NGIKKPR+HR+T T+G            KF            LR +                 R A   N            
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMD---------PKF------------LRNQ-----------------RYAKKHNNKSGE-------

Query:  -TEMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
         +EMAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGE  + E+
Subjt:  -TEMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE

KAG7013674.1 60S ribosomal protein L29-1, partial [Cucurbita argyrosperma subsp. argyrosperma]7.1e-56100Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETEMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQ
        MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETEMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQ
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETEMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQ

Query:  RYAKKHNNKSGETGSEEE
        RYAKKHNNKSGETGSEEE
Subjt:  RYAKKHNNKSGETGSEEE

XP_022959482.1 60S ribosomal protein L29-1-like [Cucurbita moschata]2.7e-23100Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
        MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE

XP_023000055.1 60S ribosomal protein L29-1 [Cucurbita maxima]1.4e-2298.36Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
        MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGET SEEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE

XP_023000056.1 60S ribosomal protein L29-1-like [Cucurbita maxima]1.8e-2296.72Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
        MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGE+G+EEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE

TrEMBL top hitse value%identityAlignment
A0A6J1H4N3 60S ribosomal protein L291.3e-23100Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
        MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE

A0A6J1KET9 60S ribosomal protein L298.6e-2396.72Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
        MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGE+G+EEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE

A0A6J1KHA4 60S ribosomal protein L296.6e-2398.36Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
        MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGET SEEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE

A0A6J1L1Y3 60S ribosomal protein L291.5e-2296.72Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
        MAKSKNHTAHNQSRKAHRNGIKKPRKHR+TSTKGMDPKFLRNQRYAKKHNNKSGETG+EEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE

A0A6J1L4P4 60S ribosomal protein L291.3e-23100Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
        MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE

SwissProt top hitse value%identityAlignment
P47914 60S ribosomal protein L295.4e-1452.53Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETEMAKSKNHTAHNQSRKAHR-NGIKKPRKHRHTSTKGMDPKFLR
        MAKSKNHT HNQSRK HRNGIKKPR  RY S KG+DPKFLRN R+AKKHN K     + K + + A   S +A     + KP++ +    KG+  K  R
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETEMAKSKNHTAHNQSRKAHR-NGIKKPRKHRHTSTKGMDPKFLR

Q84WM0 60S ribosomal protein L29-26.6e-2081.97Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
        MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGE    EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE

Q8HXB8 60S ribosomal protein L293.2e-1452.53Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETEMAKSKNHTAHNQSRKAHR-NGIKKPRKHRHTSTKGMDPKFLR
        MAKSKNHT HNQSRK HRNGIKKPR  RY S KG+DPKFLRN R+AKKHN K     + K + + A   S +A     + KP++ +    KG+  K  R
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETEMAKSKNHTAHNQSRKAHR-NGIKKPRKHRHTSTKGMDPKFLR

Q95281 60S ribosomal protein L297.0e-1452.53Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETEMAKSKNHTAHNQSRKAHR-NGIKKPRKHRHTSTKGMDPKFLR
        MAKSKNHT HNQSRK HRNGIKKPR  RY S KG+DPKFLRN R+AKKHN K     + K + + A   S +A     + KP++ +    KG   K  R
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETEMAKSKNHTAHNQSRKAHR-NGIKKPRKHRHTSTKGMDPKFLR

Q9M7X7 60S ribosomal protein L29-13.8e-2081.97Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
        MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GE  S EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE

Arabidopsis top hitse value%identityAlignment
AT3G06680.1 Ribosomal L29e protein family3.2e-2282.54Show/hide
Query:  TEMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
        TEMAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGE    EE
Subjt:  TEMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE

AT3G06680.2 Ribosomal L29e protein family4.7e-2181.97Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
        MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGE    EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE

AT3G06700.1 Ribosomal L29e protein family2.7e-2181.97Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
        MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GE  S EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE

AT3G06700.2 Ribosomal L29e protein family2.7e-2181.97Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
        MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GE  S EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE

AT3G06700.3 Ribosomal L29e protein family2.7e-2181.97Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE
        MAKSKNHTAHNQS KAH+NGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GE  S EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAGTCGAAGAATCACACAGCGCACAATCAGTCCCGCAAAGCCCATAGGAACGGCATCAAGAAACCGAGGAAGCATCGCTACACTTCCACCAAAGGAATGGATCC
GAAGTTCCTTAGGAACCAGAGGTACGCGAAGAAACACAACAATAAGAGTGGTGAAACCGAGATGGCGAAGTCGAAGAATCACACAGCGCACAATCAGTCCCGCAAAGCCC
ATAGGAACGGCATCAAGAAGCCAAGGAAGCATCGTCACACTTCCACCAAAGGAATGGATCCGAAGTTCCTTAGAAACCAGAGGTACGCGAAGAAACACAACAATAAGAGC
GGTGAAACCGGCAGTGAGGAAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAAGTCGAAGAATCACACAGCGCACAATCAGTCCCGCAAAGCCCATAGGAACGGCATCAAGAAACCGAGGAAGCATCGCTACACTTCCACCAAAGGAATGGATCC
GAAGTTCCTTAGGAACCAGAGGTACGCGAAGAAACACAACAATAAGAGTGGTGAAACCGAGATGGCGAAGTCGAAGAATCACACAGCGCACAATCAGTCCCGCAAAGCCC
ATAGGAACGGCATCAAGAAGCCAAGGAAGCATCGTCACACTTCCACCAAAGGAATGGATCCGAAGTTCCTTAGAAACCAGAGGTACGCGAAGAAACACAACAATAAGAGC
GGTGAAACCGGCAGTGAGGAAGAGTAAAGTAGAACGCCATGAAGCCGGCAAGTTTAGGGTTTTTATGATATAAGTTTGCTTCTATTGAATCTTTTGTTTTTGCTCTTCTT
TTGTTCACTAGTCTTGTAATTCTGACCTGGTTGTAGCGAATTCCATTTCAATGTGGAAAGCGCTGCTTCTGATGCCTGATTACGACAATTCATTATCAGATTTGCATTTC
TAAGGCTACATCTTCATACATAATCAATTTATGCCATCGACATTATCTTCTTATGATTCAATGCTATTTTATCTGTCTTTTATGATTCAATGCTTTTTTATCTTTGCCGA
TGGGATATTCTTTTTCCAAGTTCATTTGTCTCAACTGTTCTCTTTTTTCTGTTTTTTCTCTTCTTTTTGTATGCTTCATAACTTGGATTGAATGTTCTTGGCCTTCTTTG
ATTCTCCTTCGAATCGAAATGTGAGATCATAGTTATGAACTGCAATCTTCGTGGGTTTTAAAATTAACCGTTCAGGGTGATATTGGATTTGGGAGTGATATTTTTTTAGA
TCCAATCCACTCAGTTGTGTTATGATGTTTAGATGATGGTGAAAAATAAATTATGAATAATTGTTAATTATGAAATTAATATATACATGTATAAATTTCC
Protein sequenceShow/hide protein sequence
MAKSKNHTAHNQSRKAHRNGIKKPRKHRYTSTKGMDPKFLRNQRYAKKHNNKSGETEMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKS
GETGSEEE