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Carg05541 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05541
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
Genome locationCarg_Chr17:2097776..2098821
RNA-Seq ExpressionCarg05541
SyntenyCarg05541
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010369.1 hypothetical protein SDJN02_27162, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-1656.52Show/hide
Query:  EGFHTLVNGGLFSFPTNVGHHNPPP------SAPSVLAVPSSNRCGTTPKSTPFGPSVLTGTPPHTYPIRGTARRLTHSPMSGTDTICNGPD
        EGFHTL+N  LFS PTNV HHNPP        A  +   P S+RCGT  KSTPFG SVL GT    YP+  T   L HS +SG+DTICN PD
Subjt:  EGFHTLVNGGLFSFPTNVGHHNPPP------SAPSVLAVPSSNRCGTTPKSTPFGPSVLTGTPPHTYPIRGTARRLTHSPMSGTDTICNGPD

KAG7013676.1 hypothetical protein SDJN02_23843, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-111100Show/hide
Query:  MRCVSDEAEPRRGCTSGSHIDWRRERVTARTMGSEGPWTEGFHTLVNGGLFSFPTNVGHHNPPPSAPSVLAVPSSNRCGTTPKSTPFGPSVLTGTPPHTY
        MRCVSDEAEPRRGCTSGSHIDWRRERVTARTMGSEGPWTEGFHTLVNGGLFSFPTNVGHHNPPPSAPSVLAVPSSNRCGTTPKSTPFGPSVLTGTPPHTY
Subjt:  MRCVSDEAEPRRGCTSGSHIDWRRERVTARTMGSEGPWTEGFHTLVNGGLFSFPTNVGHHNPPPSAPSVLAVPSSNRCGTTPKSTPFGPSVLTGTPPHTY

Query:  PIRGTARRLTHSPMSGTDTICNGPDPPLADIVAYLLTVMLVTSMPPWAAKERVTATKGERHTPEKEERAGNWKKTKDTELKAPTVMSMAYWVSTFKSH
        PIRGTARRLTHSPMSGTDTICNGPDPPLADIVAYLLTVMLVTSMPPWAAKERVTATKGERHTPEKEERAGNWKKTKDTELKAPTVMSMAYWVSTFKSH
Subjt:  PIRGTARRLTHSPMSGTDTICNGPDPPLADIVAYLLTVMLVTSMPPWAAKERVTATKGERHTPEKEERAGNWKKTKDTELKAPTVMSMAYWVSTFKSH

KAG7016581.1 NAC domain-containing protein 86, partial [Cucurbita argyrosperma subsp. argyrosperma]8.4e-1765.79Show/hide
Query:  PSAPSVLAVPSSNRCGTTPKSTPFGPSVLTGTPPHTYPIRGTARRLTHSPMSGTDTI-CNGPDPPLADIVAYLLTV
        P+ P  L  PSSNRCGT PKS PFG SVL GTPP  YPIRGT R+L H  MSG+DTI CN PDPPLADI+ + L++
Subjt:  PSAPSVLAVPSSNRCGTTPKSTPFGPSVLTGTPPHTYPIRGTARRLTHSPMSGTDTI-CNGPDPPLADIVAYLLTV

KAG7016605.1 putative RNA helicase SDE3 [Cucurbita argyrosperma subsp. argyrosperma]7.6e-2663.46Show/hide
Query:  GSEGPWTEGFHTLVNGGLFSFPTNVGHHNPPPSAPSVLAVPSS--NRCGTTPKSTPFGPSVLTGTPPHTYPIRGTARRLTHSPMSGTDTICNGPDPPLAD
        G  G +   FHTL+NGGLF  PTNVG+HNPPPSA +VLA   S         KSTPFG SVLTGTPP  YP+RG ARRLTH P+ G+DTICN PDPPL D
Subjt:  GSEGPWTEGFHTLVNGGLFSFPTNVGHHNPPPSAPSVLAVPSS--NRCGTTPKSTPFGPSVLTGTPPHTYPIRGTARRLTHSPMSGTDTICNGPDPPLAD

Query:  IVAY
        IV +
Subjt:  IVAY

KAG7020816.1 hypothetical protein SDJN02_17504, partial [Cucurbita argyrosperma subsp. argyrosperma]7.8e-2350.7Show/hide
Query:  RCVSDEAEPRRGCTSGSHIDWRR---ERVTARTMGS--EGPWTEGFHTLVN-GGLFSFPTNVGHHNPPPSAPSVLAVPSS---NRCGTTPKSTPFGPSVL
        RC S+EAEP+RG      +D RR   +    R+     +    E  + + N G LFS PTNVGHHNPPPS PSVLA   S   +  G  P   PFG SVL
Subjt:  RCVSDEAEPRRGCTSGSHIDWRR---ERVTARTMGS--EGPWTEGFHTLVN-GGLFSFPTNVGHHNPPPSAPSVLAVPSS---NRCGTTPKSTPFGPSVL

Query:  TGTPPHTYPIRGTARRLTHSPMSGTDTICNGPDPPLADIVAY
        TGTPP  YP+RGTARR TH P++G++T CN PD  LADIV +
Subjt:  TGTPPHTYPIRGTARRLTHSPMSGTDTICNGPDPPLADIVAY

TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGATGTGTCAGCGATGAGGCTGAGCCTCGAAGGGGATGCACTAGTGGGTCCCACATCGATTGGAGGAGGGAACGAGTGACAGCGAGGACAATGGGCTCTGAAGGGCC
GTGGACTGAAGGTTTTCACACCCTTGTAAATGGTGGTTTGTTCTCCTTCCCAACCAATGTGGGACATCACAATCCACCCCCTTCGGCGCCCAGCGTCCTCGCTGTTCCTT
CCTCTAATCGATGTGGGACCACCCCCAAATCCACCCCCTTTGGACCCAGCGTTCTTACTGGCACACCGCCTCATACCTACCCCATTCGGGGAACAGCGAGAAGGCTGACA
CATAGTCCGATGTCTGGCACTGATACTATTTGTAACGGCCCAGATCCACCGTTAGCGGATATTGTTGCATATTTGTTAACAGTCATGCTTGTGACAAGCATGCCTCCTTG
GGCAGCAAAAGAGCGCGTAACTGCTACAAAAGGGGAAAGACACACACCGGAGAAGGAGGAGCGAGCAGGAAATTGGAAGAAGACGAAAGATACGGAATTGAAAGCTCCCA
CTGTCATGTCCATGGCGTATTGGGTTTCTACTTTCAAGTCTCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGATGTGTCAGCGATGAGGCTGAGCCTCGAAGGGGATGCACTAGTGGGTCCCACATCGATTGGAGGAGGGAACGAGTGACAGCGAGGACAATGGGCTCTGAAGGGCC
GTGGACTGAAGGTTTTCACACCCTTGTAAATGGTGGTTTGTTCTCCTTCCCAACCAATGTGGGACATCACAATCCACCCCCTTCGGCGCCCAGCGTCCTCGCTGTTCCTT
CCTCTAATCGATGTGGGACCACCCCCAAATCCACCCCCTTTGGACCCAGCGTTCTTACTGGCACACCGCCTCATACCTACCCCATTCGGGGAACAGCGAGAAGGCTGACA
CATAGTCCGATGTCTGGCACTGATACTATTTGTAACGGCCCAGATCCACCGTTAGCGGATATTGTTGCATATTTGTTAACAGTCATGCTTGTGACAAGCATGCCTCCTTG
GGCAGCAAAAGAGCGCGTAACTGCTACAAAAGGGGAAAGACACACACCGGAGAAGGAGGAGCGAGCAGGAAATTGGAAGAAGACGAAAGATACGGAATTGAAAGCTCCCA
CTGTCATGTCCATGGCGTATTGGGTTTCTACTTTCAAGTCTCACTGA
Protein sequenceShow/hide protein sequence
MRCVSDEAEPRRGCTSGSHIDWRRERVTARTMGSEGPWTEGFHTLVNGGLFSFPTNVGHHNPPPSAPSVLAVPSSNRCGTTPKSTPFGPSVLTGTPPHTYPIRGTARRLT
HSPMSGTDTICNGPDPPLADIVAYLLTVMLVTSMPPWAAKERVTATKGERHTPEKEERAGNWKKTKDTELKAPTVMSMAYWVSTFKSH