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Carg05547 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05547
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTPD1 protein homolog 1-like
Genome locationCarg_Chr17:2135422..2136625
RNA-Seq ExpressionCarg05547
SyntenyCarg05547
Gene Ontology termsGO:0001709 - cell fate determination (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR040361 - Tapetum determinant 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CDO98766.1 unnamed protein product [Coffea canephora]2.2e-3460.33Show/hide
Query:  NPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQI
        N +  +EP +  L  +K L  + CS RDISISQ   STSGIPQY V+I+NTC+S CAP  +HL CG F+SA L++PR FRRL  DDCLVNGG+ L+ GQI
Subjt:  NPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQI

Query:  IRFVYSTTFKFPLAFKSAKFC
        IRF YS +F +PL+FKSAKFC
Subjt:  IRFVYSTTFKFPLAFKSAKFC

KAG6575113.1 TPD1 protein-like 1, partial [Cucurbita argyrosperma subsp. sororia]1.7e-6698.45Show/hide
Query:  MASSFNHTNPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGG
        MASSFN TNPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHL CGMFSSANLIDPRLFRRLGNDDCLVNGG
Subjt:  MASSFNHTNPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGG

Query:  RALKPGQIIRFVYSTTFKFPLAFKSAKFC
        RALKPGQIIRFVYSTTFKFPLAFKSAKFC
Subjt:  RALKPGQIIRFVYSTTFKFPLAFKSAKFC

KAG7013682.1 TPD1 protein-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-68100Show/hide
Query:  MASSFNHTNPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGG
        MASSFNHTNPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGG
Subjt:  MASSFNHTNPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGG

Query:  RALKPGQIIRFVYSTTFKFPLAFKSAKFC
        RALKPGQIIRFVYSTTFKFPLAFKSAKFC
Subjt:  RALKPGQIIRFVYSTTFKFPLAFKSAKFC

THG09616.1 hypothetical protein TEA_027938 [Camellia sinensis var. sinensis]2.2e-3466.04Show/hide
Query:  KPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLS-DCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLAF
        KPLK  KC+GRDISI+QG+ S +GIP+Y VEI+NTCLS +C P ++HL CG+F+SA L+ P+LF+RL NDDCLVNGG+ LK GQ+IRF YS TFK+P++F
Subjt:  KPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLS-DCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLAF

Query:  KSAKFC
        KSA FC
Subjt:  KSAKFC

XP_022959000.1 TPD1 protein homolog 1-like [Cucurbita moschata]3.7e-6697.67Show/hide
Query:  MASSFNHTNPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGG
        MASSFNHTNPSIPVEPER LLH KKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLI+PRLFRRLGNDDCLVNGG
Subjt:  MASSFNHTNPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGG

Query:  RALKPGQIIRFVYSTTFKFPLAFKSAKFC
        RALKPGQIIRFVYSTTFKFPLAFKSAKFC
Subjt:  RALKPGQIIRFVYSTTFKFPLAFKSAKFC

TrEMBL top hitse value%identityAlignment
A0A068TRC0 Uncharacterized protein1.1e-3460.33Show/hide
Query:  NPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQI
        N +  +EP +  L  +K L  + CS RDISISQ   STSGIPQY V+I+NTC+S CAP  +HL CG F+SA L++PR FRRL  DDCLVNGG+ L+ GQI
Subjt:  NPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQI

Query:  IRFVYSTTFKFPLAFKSAKFC
        IRF YS +F +PL+FKSAKFC
Subjt:  IRFVYSTTFKFPLAFKSAKFC

A0A445GTD7 TPD1 protein-like 11.5e-3357.36Show/hide
Query:  SSFNHTNPSIPVEPERELLH--LKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGG
        SS    N SI V  + E  H   +K      C+ +DISISQ Q ST GIPQ+ V+I+N C+S CAP D+HL CGMF+SA +++PRLF+R+  DDCLVNGG
Subjt:  SSFNHTNPSIPVEPERELLH--LKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGG

Query:  RALKPGQIIRFVYSTTFKFPLAFKSAKFC
          L P QIIRF YS TF +PLAFKSAKFC
Subjt:  RALKPGQIIRFVYSTTFKFPLAFKSAKFC

A0A4S4E328 Uncharacterized protein1.1e-3466.04Show/hide
Query:  KPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLS-DCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLAF
        KPLK  KC+GRDISI+QG+ S +GIP+Y VEI+NTCLS +C P ++HL CG+F+SA L+ P+LF+RL NDDCLVNGG+ LK GQ+IRF YS TFK+P++F
Subjt:  KPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLS-DCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLAF

Query:  KSAKFC
        KSA FC
Subjt:  KSAKFC

A0A6J1H526 TPD1 protein homolog 1-like1.8e-6697.67Show/hide
Query:  MASSFNHTNPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGG
        MASSFNHTNPSIPVEPER LLH KKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLI+PRLFRRLGNDDCLVNGG
Subjt:  MASSFNHTNPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGG

Query:  RALKPGQIIRFVYSTTFKFPLAFKSAKFC
        RALKPGQIIRFVYSTTFKFPLAFKSAKFC
Subjt:  RALKPGQIIRFVYSTTFKFPLAFKSAKFC

I1MGE9 Uncharacterized protein1.5e-3357.36Show/hide
Query:  SSFNHTNPSIPVEPERELLH--LKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGG
        SS    N SI V  + E  H   +K      C+ +DISISQ Q ST GIPQ+ V+I+N C+S CAP D+HL CGMF+SA +++PRLF+R+  DDCLVNGG
Subjt:  SSFNHTNPSIPVEPERELLH--LKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGG

Query:  RALKPGQIIRFVYSTTFKFPLAFKSAKFC
          L P QIIRF YS TF +PLAFKSAKFC
Subjt:  RALKPGQIIRFVYSTTFKFPLAFKSAKFC

SwissProt top hitse value%identityAlignment
A8MS78 Uncharacterized protein At1g058351.0e-0534.04Show/hide
Query:  CSGR--DISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGND--DCLVNGGRALKPGQIIRFVYSTTFKFPL
        C G+  + ++ Q QV      ++ VE+MN C   C  +++ L C  F   +L+DP   R L +   +C+VN G  L P Q + F YS T +F L
Subjt:  CSGR--DISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGND--DCLVNGGRALKPGQIIRFVYSTTFKFPL

Q1G3T1 TPD1 protein homolog 14.1e-2350Show/hide
Query:  EKCSGRDISISQGQVS--TSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLAFKS
        + CS  DI + QG  +   SG+P Y VEI N+C+SDC   ++H+SCG FSS  L++PR+FRRL  DDCLVN G+ L PGQ + F Y+ +F +PL+  S
Subjt:  EKCSGRDISISQGQVS--TSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLAFKS

Q2QR54 TPD1 protein homolog 1A2.7e-1944.23Show/hide
Query:  CSGR-DISISQGQVS--TSGIPQYAVEIMNTCL------SDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLA
        C+G  DI+I QG+ +   SG+P Y V++MN C        +CA   +H+ CG FSS +L+DPR+FRRLG+DDCL+N GR L  G+ + F Y+ +F + L+
Subjt:  CSGR-DISISQGQVS--TSGIPQYAVEIMNTCL------SDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLA

Query:  FKSA
           A
Subjt:  FKSA

Q6TLJ2 Protein TAPETUM DETERMINANT 11.0e-1844.14Show/hide
Query:  VEPERELLHLKKPLKQEKCSGRDISISQG--QVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRF
        VEPER           EKC   DI ++Q   +   +GIP Y VEI N C+S C    +H++CG FSSA LI+PR+F+R+  DDCLVN G+ L  G  + F
Subjt:  VEPERELLHLKKPLKQEKCSGRDISISQG--QVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRF

Query:  VYSTTFKFPLA
         Y+ TF + L+
Subjt:  VYSTTFKFPLA

Q8S6P9 TPD1 protein homolog 1B1.6e-1943.69Show/hide
Query:  HLKKPLKQEKCSGRDISISQGQVS--TSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKF
        H  + ++ + CS +++ + Q       SGIP Y+VEI+N C + C   DVH+SCG F+SA L+DP  F+R+G +DCLV GG  L P + + F YS +F +
Subjt:  HLKKPLKQEKCSGRDISISQGQVS--TSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKF

Query:  PLA
        PLA
Subjt:  PLA

Arabidopsis top hitse value%identityAlignment
AT1G05835.1 PHD finger protein7.1e-0734.04Show/hide
Query:  CSGR--DISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGND--DCLVNGGRALKPGQIIRFVYSTTFKFPL
        C G+  + ++ Q QV      ++ VE+MN C   C  +++ L C  F   +L+DP   R L +   +C+VN G  L P Q + F YS T +F L
Subjt:  CSGR--DISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGND--DCLVNGGRALKPGQIIRFVYSTTFKFPL

AT1G32583.1 FUNCTIONS IN: molecular_function unknown2.9e-2450Show/hide
Query:  EKCSGRDISISQGQVS--TSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLAFKS
        + CS  DI + QG  +   SG+P Y VEI N+C+SDC   ++H+SCG FSS  L++PR+FRRL  DDCLVN G+ L PGQ + F Y+ +F +PL+  S
Subjt:  EKCSGRDISISQGQVS--TSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRFVYSTTFKFPLAFKS

AT4G24972.1 tapetum determinant 17.4e-2044.14Show/hide
Query:  VEPERELLHLKKPLKQEKCSGRDISISQG--QVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRF
        VEPER           EKC   DI ++Q   +   +GIP Y VEI N C+S C    +H++CG FSSA LI+PR+F+R+  DDCLVN G+ L  G  + F
Subjt:  VEPERELLHLKKPLKQEKCSGRDISISQG--QVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIRF

Query:  VYSTTFKFPLA
         Y+ TF + L+
Subjt:  VYSTTFKFPLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCTTCCTTCAACCACACGAACCCTTCAATTCCCGTCGAGCCCGAGCGAGAGCTTCTCCACCTTAAAAAGCCTTTGAAGCAAGAAAAATGCAGCGGGAGAGACAT
AAGCATATCGCAGGGACAAGTTTCAACGTCGGGGATTCCACAGTACGCCGTCGAAATCATGAACACGTGTCTCTCCGATTGCGCGCCGTTGGATGTTCATCTGTCTTGCG
GCATGTTTTCCTCTGCAAACCTCATAGACCCTAGACTTTTCAGGCGCCTGGGTAACGATGATTGTTTGGTGAACGGCGGGCGGGCATTGAAACCAGGCCAAATCATCAGA
TTCGTTTACTCCACCACCTTCAAGTTCCCTCTCGCCTTCAAATCCGCCAAATTCTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCTTCCTTCAACCACACGAACCCTTCAATTCCCGTCGAGCCCGAGCGAGAGCTTCTCCACCTTAAAAAGCCTTTGAAGCAAGAAAAATGCAGCGGGAGAGACAT
AAGCATATCGCAGGGACAAGTTTCAACGTCGGGGATTCCACAGTACGCCGTCGAAATCATGAACACGTGTCTCTCCGATTGCGCGCCGTTGGATGTTCATCTGTCTTGCG
GCATGTTTTCCTCTGCAAACCTCATAGACCCTAGACTTTTCAGGCGCCTGGGTAACGATGATTGTTTGGTGAACGGCGGGCGGGCATTGAAACCAGGCCAAATCATCAGA
TTCGTTTACTCCACCACCTTCAAGTTCCCTCTCGCCTTCAAATCCGCCAAATTCTGTTAA
Protein sequenceShow/hide protein sequence
MASSFNHTNPSIPVEPERELLHLKKPLKQEKCSGRDISISQGQVSTSGIPQYAVEIMNTCLSDCAPLDVHLSCGMFSSANLIDPRLFRRLGNDDCLVNGGRALKPGQIIR
FVYSTTFKFPLAFKSAKFC