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Carg05580 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05580
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionnovel plant SNARE 13
Genome locationCarg_Chr17:2396348..2398167
RNA-Seq ExpressionCarg05580
SyntenyCarg05580
Gene Ontology termsGO:0006890 - retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (biological process)
GO:0015031 - protein transport (biological process)
GO:0061025 - membrane fusion (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0031201 - SNARE complex (cellular component)
GO:0005484 - SNAP receptor activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013714.1 putative plant SNARE 12, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-53100Show/hide
Query:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQPLFFFESNPGLKISREKSSVIDINCDSSKASRWT
        MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQPLFFFESNPGLKISREKSSVIDINCDSSKASRWT
Subjt:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQPLFFFESNPGLKISREKSSVIDINCDSSKASRWT

Query:  MLVGCNVGMA
        MLVGCNVGMA
Subjt:  MLVGCNVGMA
XP_022959325.1 uncharacterized protein LOC111460335 isoform X1 [Cucurbita moschata]1.1e-26100Show/hide
Query:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
        MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
Subjt:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
XP_022959327.1 uncharacterized protein LOC111460335 isoform X2 [Cucurbita moschata]1.1e-26100Show/hide
Query:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
        MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
Subjt:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
XP_022959328.1 uncharacterized protein LOC111460335 isoform X3 [Cucurbita moschata]1.1e-26100Show/hide
Query:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
        MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
Subjt:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
XP_023006497.1 uncharacterized protein LOC111499213 isoform X1 [Cucurbita maxima]1.4e-2698.48Show/hide
Query:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
        MFDERGINEPTTDDNIQMTSSITSQELTN+GKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
Subjt:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
TrEMBL top hitse value%identityAlignment
A0A6J1H476 uncharacterized protein LOC111460335 isoform X25.4e-27100Show/hide
Query:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
        MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
Subjt:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
A0A6J1H5M0 uncharacterized protein LOC111460335 isoform X35.4e-27100Show/hide
Query:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
        MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
Subjt:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
A0A6J1H5Z5 uncharacterized protein LOC111460335 isoform X15.4e-27100Show/hide
Query:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
        MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
Subjt:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
A0A6J1KW10 uncharacterized protein LOC111499213 isoform X17.0e-2798.48Show/hide
Query:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
        MFDERGINEPTTDDNIQMTSSITSQELTN+GKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
Subjt:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
A0A6J1L2B9 uncharacterized protein LOC111499213 isoform X27.0e-2798.48Show/hide
Query:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
        MFDERGINEPTTDDNIQMTSSITSQELTN+GKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
Subjt:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
SwissProt top hitse value%identityAlignment
Q944A9 Novel plant SNARE 114.3e-0530.84Show/hide
Query:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQPLFFFESNPGLKISREKSSVIDINCDSSKASRWT
        +FD  G  E   ++N+ + S++++QEL + G   MDDTD AIE  K +V++T+ VG  +S+    Q           ++SR  + +  I+    KAS+  
Subjt:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQPLFFFESNPGLKISREKSSVIDINCDSSKASRWT

Query:  MLVGCNV
          +G  V
Subjt:  MLVGCNV
Q9LNH6 Novel plant SNARE 124.4e-1055.17Show/hide
Query:  EPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
        EPT ++N+QM S++++QEL + G K MD+TD AIE SK VV QT+EVG Q++S   GQ
Subjt:  EPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
Q9LRP1 Novel plant SNARE 133.4e-1055.17Show/hide
Query:  EPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
        EPT ++N+Q+ SS+++QEL + G K MD+TD AIE SK VVEQT+EVG Q+++   GQ
Subjt:  EPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
Arabidopsis top hitse value%identityAlignment
AT1G48240.1 novel plant snare 123.1e-1155.17Show/hide
Query:  EPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
        EPT ++N+QM S++++QEL + G K MD+TD AIE SK VV QT+EVG Q++S   GQ
Subjt:  EPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
AT2G35190.1 novel plant snare 113.0e-0630.84Show/hide
Query:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQPLFFFESNPGLKISREKSSVIDINCDSSKASRWT
        +FD  G  E   ++N+ + S++++QEL + G   MDDTD AIE  K +V++T+ VG  +S+    Q           ++SR  + +  I+    KAS+  
Subjt:  MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQPLFFFESNPGLKISREKSSVIDINCDSSKASRWT

Query:  MLVGCNV
          +G  V
Subjt:  MLVGCNV
AT3G17440.1 novel plant snare 132.4e-1155.17Show/hide
Query:  EPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
        EPT ++N+Q+ SS+++QEL + G K MD+TD AIE SK VVEQT+EVG Q+++   GQ
Subjt:  EPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
AT3G17440.2 novel plant snare 132.4e-1155.17Show/hide
Query:  EPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ
        EPT ++N+Q+ SS+++QEL + G K MD+TD AIE SK VVEQT+EVG Q+++   GQ
Subjt:  EPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGATGAGAGAGGCATTAATGAACCTACAACTGATGATAACATTCAGATGACATCATCAATAACAAGTCAAGAACTCACCAATGTTGGGAAGAAGACAATGGATGA
TACTGATCCGGCAATTGAAAGCTCTAAAATGGTAGTCGAACAAACAGTTGAAGTGGGAAGGCAATCTTCTTCTACATGGGATGGCCAACCTTTGTTCTTCTTTGAGTCTA
ATCCTGGTCTTAAGATTAGTCGAGAAAAGAGCTCAGTTATTGATATTAATTGTGATTCATCTAAGGCTTCCAGATGGACCATGTTGGTTGGTTGTAATGTAGGGATGGCC
TAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGATGAGAGAGGCATTAATGAACCTACAACTGATGATAACATTCAGATGACATCATCAATAACAAGTCAAGAACTCACCAATGTTGGGAAGAAGACAATGGATGA
TACTGATCCGGCAATTGAAAGCTCTAAAATGGTAGTCGAACAAACAGTTGAAGTGGGAAGGCAATCTTCTTCTACATGGGATGGCCAACCTTTGTTCTTCTTTGAGTCTA
ATCCTGGTCTTAAGATTAGTCGAGAAAAGAGCTCAGTTATTGATATTAATTGTGATTCATCTAAGGCTTCCAGATGGACCATGTTGGTTGGTTGTAATGTAGGGATGGCC
TAA
Protein sequenceShow/hide protein sequence
MFDERGINEPTTDDNIQMTSSITSQELTNVGKKTMDDTDPAIESSKMVVEQTVEVGRQSSSTWDGQPLFFFESNPGLKISREKSSVIDINCDSSKASRWTMLVGCNVGMA