; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg05587 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05587
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCarg_Chr17:2465421..2478003
RNA-Seq ExpressionCarg05587
SyntenyCarg05587
Gene Ontology termsGO:0006275 - regulation of DNA replication (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0030337 - DNA polymerase processivity factor activity (molecular function)
InterPro domainsIPR000730 - Proliferating cell nuclear antigen, PCNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575164.1 hypothetical protein SDJN03_25803, partial [Cucurbita argyrosperma subsp. sororia]2.4e-10485.78Show/hide
Query:  SNAVFLFNQLSLEADVKFTHNMFSLTVSNASIRFIIKLDIWDELFAEYSVDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHNSASPNAP
        S+AVFLFNQLSLEADVKFTHNMFSLTVSNASIRFIIKLDIWDELFAEYSVDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHNSASPNAP
Subjt:  SNAVFLFNQLSLEADVKFTHNMFSLTVSNASIRFIIKLDIWDELFAEYSVDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHNSASPNAP

Query:  SWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIRE--------------------------------ARKIQIAGYEEGDTDQFRISLHPMMFFLRL
        SWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIRE                                ARKIQIAGYEEGDTDQFRISLHPMMFFLRL
Subjt:  SWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIRE--------------------------------ARKIQIAGYEEGDTDQFRISLHPMMFFLRL

Query:  SYQSETAWFCKTMDGSHTIISIPASHFNLEYV
        SYQSETAWFCKTMDGSHTIISIPASHFNLEYV
Subjt:  SYQSETAWFCKTMDGSHTIISIPASHFNLEYV

KAG7013721.1 hypothetical protein SDJN02_23888, partial [Cucurbita argyrosperma subsp. argyrosperma]3.0e-256100Show/hide
Query:  MFLVRLHHFDPLMEATSILAQISNEADLKFSSSKFSLITSYPSRRFVATFQISHRFFANYFVDRNHSSRVSLQSFYNAMYAGIVFSSMTIHFPETTSRMV
        MFLVRLHHFDPLMEATSILAQISNEADLKFSSSKFSLITSYPSRRFVATFQISHRFFANYFVDRNHSSRVSLQSFYNAMYAGIVFSSMTIHFPETTSRMV
Subjt:  MFLVRLHHFDPLMEATSILAQISNEADLKFSSSKFSLITSYPSRRFVATFQISHRFFANYFVDRNHSSRVSLQSFYNAMYAGIVFSSMTIHFPETTSRMV

Query:  LQFESSNHTRMQMHRVLKLSPSQEEELGQIQHDRYFSIISQDFRDIITGLPSFPNNSNAVFLFNQLSLEADVKFTHNMFSLTVSNASIRFIIKLDIWDEL
        LQFESSNHTRMQMHRVLKLSPSQEEELGQIQHDRYFSIISQDFRDIITGLPSFPNNSNAVFLFNQLSLEADVKFTHNMFSLTVSNASIRFIIKLDIWDEL
Subjt:  LQFESSNHTRMQMHRVLKLSPSQEEELGQIQHDRYFSIISQDFRDIITGLPSFPNNSNAVFLFNQLSLEADVKFTHNMFSLTVSNASIRFIIKLDIWDEL

Query:  FAEYSVDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHNSASPNAPSWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIREARKIQI
        FAEYSVDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHNSASPNAPSWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIREARKIQI
Subjt:  FAEYSVDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHNSASPNAPSWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIREARKIQI

Query:  AGYEEGDTDQFRISLHPMMFFLRLSYQSETAWFCKTMDGSHTIISIPASHFNLEYVHHSTTAPQHHVLDAVFQLGQIADEANLKFSPLQFSLTASNHSLG
        AGYEEGDTDQFRISLHPMMFFLRLSYQSETAWFCKTMDGSHTIISIPASHFNLEYVHHSTTAPQHHVLDAVFQLGQIADEANLKFSPLQFSLTASNHSLG
Subjt:  AGYEEGDTDQFRISLHPMMFFLRLSYQSETAWFCKTMDGSHTIISIPASHFNLEYVHHSTTAPQHHVLDAVFQLGQIADEANLKFSPLQFSLTASNHSLG

Query:  FVASLHIWDDFFTEYSVDESLSSRISLQSFHNAMHIIREASPFPNDPSN
        FVASLHIWDDFFTEYSVDESLSSRISLQSFHNAMHIIREASPFPNDPSN
Subjt:  FVASLHIWDDFFTEYSVDESLSSRISLQSFHNAMHIIREASPFPNDPSN

XP_022958857.1 uncharacterized protein LOC111460011 [Cucurbita moschata]5.1e-7896.91Show/hide
Query:  MFLVRLHHFDPLMEATSILAQISNEADLKFSSSKFSLITSYPSRRFVATFQISHRFFANYFVDRNHSSRVSLQSFYNAMYAGIVFSSMTIHFPETTSRMV
        MFLVRLHHFDPLMEATSILAQISNEADLKFSSSKFSLITSYPS RFVATFQISHRFFANYFVDRNHSSRVSLQSFYNAMYAGIVFSSMTIHFPETTSRMV
Subjt:  MFLVRLHHFDPLMEATSILAQISNEADLKFSSSKFSLITSYPSRRFVATFQISHRFFANYFVDRNHSSRVSLQSFYNAMYAGIVFSSMTIHFPETTSRMV

Query:  LQFESSNHTRMQMHRVLKLSPSQEEELGQIQHDRYFSIISQDFRDIITGLPSFPNNSNAVFL
        LQFESSNHTRMQMHRVLKLSPSQEEELGQIQHDR+FSIISQDFRDIITGLPSFPNNS  V L
Subjt:  LQFESSNHTRMQMHRVLKLSPSQEEELGQIQHDRYFSIISQDFRDIITGLPSFPNNSNAVFL

XP_022958858.1 uncharacterized protein LOC111460013 [Cucurbita moschata]3.0e-9484.26Show/hide
Query:  SNAVFLFNQLSLEADVKFTHNMFSLTVSNASIRFIIKLDIWDELFAEYSVDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHNSASPNAP
        S+AVFLFNQLSLEADVKFTHNMFSLTVSNASIRFIIKLDIWDELFAEYSVDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHNSASPNAP
Subjt:  SNAVFLFNQLSLEADVKFTHNMFSLTVSNASIRFIIKLDIWDELFAEYSVDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHNSASPNAP

Query:  SWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIRE--------------------------------ARKIQIAGYEEGDTDQFRISLHPMMFFLRL
        SWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIRE                                ARKIQIAGYEEGDTDQFRISLHPMMFFLRL
Subjt:  SWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIRE--------------------------------ARKIQIAGYEEGDTDQFRISLHPMMFFLRL

Query:  SYQSETAWFCKTMDGS
        SYQSETAWFCKTMDG+
Subjt:  SYQSETAWFCKTMDGS

XP_023006008.1 uncharacterized protein LOC111498886 [Cucurbita maxima]8.1e-10082.76Show/hide
Query:  SNAVFLFNQLSLEADVKFTHNMFSLTVSNASIRFIIKLDIWDELFAEYSVDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHNSASPNAP
        S+AVFLFNQLSLE DVKFTHNMFSLTVSNASIRFIIKLDIWDELFAEYSVDPNQCWRISL TFQK LWDG SYSSMTFLMHETRSRMVLEFHNSA PN P
Subjt:  SNAVFLFNQLSLEADVKFTHNMFSLTVSNASIRFIIKLDIWDELFAEYSVDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHNSASPNAP

Query:  SWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIRE--------------------------------ARKIQIAGYEEGDTDQFRISLHPMMFFLRL
        SWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIRE                                ARKIQIAGYEEGDTDQFRISLHPM FFLRL
Subjt:  SWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIRE--------------------------------ARKIQIAGYEEGDTDQFRISLHPMMFFLRL

Query:  SYQSETAWFCKTMDGSHTIISIPASHFNLEYV
        SYQSETAWFCKTMDGSHTIISIPASHFNLEYV
Subjt:  SYQSETAWFCKTMDGSHTIISIPASHFNLEYV

TrEMBL top hitse value%identityAlignment
A0A1S3C8J1 uncharacterized protein LOC1034980102.9e-3148.75Show/hide
Query:  MFLVRLHHFDPLMEATSILAQISNEADLKFSSSKFSLITSYPSRRFVATFQISHRFFANYFVDRNHSSRVSLQSFYNAMYAGIVFSSMTIHFPETTSRMV
        MFLVRL  F+PL++ATS+LAQ++ +AD+KF+     +I S  S +FVAT Q+S R F N+ VD N SS+VSLQ F++AM  G  FSSMTIH  +TT++MV
Subjt:  MFLVRLHHFDPLMEATSILAQISNEADLKFSSSKFSLITSYPSRRFVATFQISHRFFANYFVDRNHSSRVSLQSFYNAMYAGIVFSSMTIHFPETTSRMV

Query:  LQFESSNHTRMQMHRVLKLSPSQEEELGQIQHDRYFSIISQDFRDIITGLPSFPNNSNAV
        L+FE+ +H    +H  L LSP Q E LGQ+++  +F++ S++ R II  LP F  ++ +V
Subjt:  LQFESSNHTRMQMHRVLKLSPSQEEELGQIQHDRYFSIISQDFRDIITGLPSFPNNSNAV

A0A6J1H2Z8 uncharacterized protein LOC1114600112.5e-7896.91Show/hide
Query:  MFLVRLHHFDPLMEATSILAQISNEADLKFSSSKFSLITSYPSRRFVATFQISHRFFANYFVDRNHSSRVSLQSFYNAMYAGIVFSSMTIHFPETTSRMV
        MFLVRLHHFDPLMEATSILAQISNEADLKFSSSKFSLITSYPS RFVATFQISHRFFANYFVDRNHSSRVSLQSFYNAMYAGIVFSSMTIHFPETTSRMV
Subjt:  MFLVRLHHFDPLMEATSILAQISNEADLKFSSSKFSLITSYPSRRFVATFQISHRFFANYFVDRNHSSRVSLQSFYNAMYAGIVFSSMTIHFPETTSRMV

Query:  LQFESSNHTRMQMHRVLKLSPSQEEELGQIQHDRYFSIISQDFRDIITGLPSFPNNSNAVFL
        LQFESSNHTRMQMHRVLKLSPSQEEELGQIQHDR+FSIISQDFRDIITGLPSFPNNS  V L
Subjt:  LQFESSNHTRMQMHRVLKLSPSQEEELGQIQHDRYFSIISQDFRDIITGLPSFPNNSNAVFL

A0A6J1H490 uncharacterized protein LOC1114600131.4e-9484.26Show/hide
Query:  SNAVFLFNQLSLEADVKFTHNMFSLTVSNASIRFIIKLDIWDELFAEYSVDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHNSASPNAP
        S+AVFLFNQLSLEADVKFTHNMFSLTVSNASIRFIIKLDIWDELFAEYSVDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHNSASPNAP
Subjt:  SNAVFLFNQLSLEADVKFTHNMFSLTVSNASIRFIIKLDIWDELFAEYSVDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHNSASPNAP

Query:  SWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIRE--------------------------------ARKIQIAGYEEGDTDQFRISLHPMMFFLRL
        SWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIRE                                ARKIQIAGYEEGDTDQFRISLHPMMFFLRL
Subjt:  SWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIRE--------------------------------ARKIQIAGYEEGDTDQFRISLHPMMFFLRL

Query:  SYQSETAWFCKTMDGS
        SYQSETAWFCKTMDG+
Subjt:  SYQSETAWFCKTMDGS

A0A6J1KZ05 uncharacterized protein LOC1114988874.8e-7491.98Show/hide
Query:  MFLVRLHHFDPLMEATSILAQISNEADLKFSSSKFSLITSYPSRRFVATFQISHRFFANYFVDRNHSSRVSLQSFYNAMYAGIVFSSMTIHFPETTSRMV
        MFLVRLHHFDPL EATS+LAQISNEADLKFSSSKFSLITSYPSRRFVATFQISHRFFANY VDRNHSSRVSLQSFY+AMY GI FSSMTIHFPETTSRMV
Subjt:  MFLVRLHHFDPLMEATSILAQISNEADLKFSSSKFSLITSYPSRRFVATFQISHRFFANYFVDRNHSSRVSLQSFYNAMYAGIVFSSMTIHFPETTSRMV

Query:  LQFESSNHTRMQMHRVLKLSPSQEEELGQIQHDRYFSIISQDFRDIITGLPSFPNNSNAVFL
        LQFESSNHT+++MHRVLKLSPSQEEELGQIQHDR+FSIISQDFRDIITGLPSFPNNS  V L
Subjt:  LQFESSNHTRMQMHRVLKLSPSQEEELGQIQHDRYFSIISQDFRDIITGLPSFPNNSNAVFL

A0A6J1L3R4 uncharacterized protein LOC1114988863.9e-10082.76Show/hide
Query:  SNAVFLFNQLSLEADVKFTHNMFSLTVSNASIRFIIKLDIWDELFAEYSVDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHNSASPNAP
        S+AVFLFNQLSLE DVKFTHNMFSLTVSNASIRFIIKLDIWDELFAEYSVDPNQCWRISL TFQK LWDG SYSSMTFLMHETRSRMVLEFHNSA PN P
Subjt:  SNAVFLFNQLSLEADVKFTHNMFSLTVSNASIRFIIKLDIWDELFAEYSVDPNQCWRISLSTFQKSLWDGGSYSSMTFLMHETRSRMVLEFHNSASPNAP

Query:  SWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIRE--------------------------------ARKIQIAGYEEGDTDQFRISLHPMMFFLRL
        SWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIRE                                ARKIQIAGYEEGDTDQFRISLHPM FFLRL
Subjt:  SWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIRE--------------------------------ARKIQIAGYEEGDTDQFRISLHPMMFFLRL

Query:  SYQSETAWFCKTMDGSHTIISIPASHFNLEYV
        SYQSETAWFCKTMDGSHTIISIPASHFNLEYV
Subjt:  SYQSETAWFCKTMDGSHTIISIPASHFNLEYV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTGGTCAGGCTTCACCACTTCGATCCTCTTATGGAAGCAACCTCCATACTGGCTCAAATTTCTAATGAAGCTGACCTGAAATTCTCGTCATCGAAGTTCTCCCT
AATTACCTCGTACCCTTCCCGTCGCTTCGTCGCAACATTTCAAATCTCGCACCGTTTCTTCGCCAACTATTTCGTCGATCGGAATCACAGTTCAAGGGTTTCCCTCCAAT
CCTTCTATAATGCCATGTACGCTGGTATAGTTTTTTCTTCAATGACCATTCATTTTCCAGAAACAACAAGCCGCATGGTCCTTCAATTTGAGTCTTCAAATCATACGAGG
ATGCAAATGCATCGTGTGTTAAAACTATCACCTTCTCAAGAGGAGGAATTAGGCCAAATTCAACATGATCGATATTTCTCTATCATTTCACAAGATTTTAGAGACATCAT
AACAGGATTACCCTCGTTCCCAAATAATTCAAACGCAGTCTTTCTGTTTAATCAATTGTCTCTTGAAGCCGACGTGAAATTCACTCATAACATGTTCTCGTTAACCGTCT
CGAACGCTTCGATTCGGTTCATCATAAAGCTCGATATTTGGGACGAGCTTTTCGCGGAATATTCAGTCGATCCGAATCAGTGTTGGAGAATTTCCCTCTCAACTTTCCAA
AAATCTTTGTGGGATGGCGGAAGTTACTCTTCCATGACCTTCCTTATGCATGAAACTAGAAGCCGCATGGTGCTTGAGTTTCATAATTCAGCTTCTCCCAATGCCCCAAG
TTGGCATCGAGAATTGACATTGTTGCCTTCGGAAGAGGTGGATATTGGCGAAGTTGAAAGTGAAAAAAATTTCATAATTGAGGCAGAAGATTTCAGGCACATTATAAGAG
AAGCTCGAAAAATTCAAATTGCAGGGTATGAAGAAGGAGATACAGATCAATTCCGAATCAGTCTACATCCGATGATGTTTTTCCTTAGATTGTCATATCAATCGGAAACA
GCATGGTTTTGTAAGACGATGGATGGTTCCCATACTATAATCTCTATACCAGCCTCTCACTTTAATCTTGAATATGTGCACCACAGCACCACAGCACCACAGCACCATGT
TCTCGACGCAGTGTTTCAGTTGGGTCAAATTGCTGATGAAGCCAACCTGAAATTCTCTCCATTGCAATTCTCGTTAACCGCCTCGAACCATTCCCTTGGCTTCGTCGCAT
CGCTGCATATTTGGGACGACTTTTTCACAGAATATTCTGTTGATGAGAGTCTGAGTTCAAGAATTTCCCTCCAAAGTTTCCATAATGCTATGCACATAATAAGAGAGGCA
TCTCCATTCCCTAATGATCCAAGTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTGGTCAGGCTTCACCACTTCGATCCTCTTATGGAAGCAACCTCCATACTGGCTCAAATTTCTAATGAAGCTGACCTGAAATTCTCGTCATCGAAGTTCTCCCT
AATTACCTCGTACCCTTCCCGTCGCTTCGTCGCAACATTTCAAATCTCGCACCGTTTCTTCGCCAACTATTTCGTCGATCGGAATCACAGTTCAAGGGTTTCCCTCCAAT
CCTTCTATAATGCCATGTACGCTGGTATAGTTTTTTCTTCAATGACCATTCATTTTCCAGAAACAACAAGCCGCATGGTCCTTCAATTTGAGTCTTCAAATCATACGAGG
ATGCAAATGCATCGTGTGTTAAAACTATCACCTTCTCAAGAGGAGGAATTAGGCCAAATTCAACATGATCGATATTTCTCTATCATTTCACAAGATTTTAGAGACATCAT
AACAGGATTACCCTCGTTCCCAAATAATTCAAACGCAGTCTTTCTGTTTAATCAATTGTCTCTTGAAGCCGACGTGAAATTCACTCATAACATGTTCTCGTTAACCGTCT
CGAACGCTTCGATTCGGTTCATCATAAAGCTCGATATTTGGGACGAGCTTTTCGCGGAATATTCAGTCGATCCGAATCAGTGTTGGAGAATTTCCCTCTCAACTTTCCAA
AAATCTTTGTGGGATGGCGGAAGTTACTCTTCCATGACCTTCCTTATGCATGAAACTAGAAGCCGCATGGTGCTTGAGTTTCATAATTCAGCTTCTCCCAATGCCCCAAG
TTGGCATCGAGAATTGACATTGTTGCCTTCGGAAGAGGTGGATATTGGCGAAGTTGAAAGTGAAAAAAATTTCATAATTGAGGCAGAAGATTTCAGGCACATTATAAGAG
AAGCTCGAAAAATTCAAATTGCAGGGTATGAAGAAGGAGATACAGATCAATTCCGAATCAGTCTACATCCGATGATGTTTTTCCTTAGATTGTCATATCAATCGGAAACA
GCATGGTTTTGTAAGACGATGGATGGTTCCCATACTATAATCTCTATACCAGCCTCTCACTTTAATCTTGAATATGTGCACCACAGCACCACAGCACCACAGCACCATGT
TCTCGACGCAGTGTTTCAGTTGGGTCAAATTGCTGATGAAGCCAACCTGAAATTCTCTCCATTGCAATTCTCGTTAACCGCCTCGAACCATTCCCTTGGCTTCGTCGCAT
CGCTGCATATTTGGGACGACTTTTTCACAGAATATTCTGTTGATGAGAGTCTGAGTTCAAGAATTTCCCTCCAAAGTTTCCATAATGCTATGCACATAATAAGAGAGGCA
TCTCCATTCCCTAATGATCCAAGTAATTAA
Protein sequenceShow/hide protein sequence
MFLVRLHHFDPLMEATSILAQISNEADLKFSSSKFSLITSYPSRRFVATFQISHRFFANYFVDRNHSSRVSLQSFYNAMYAGIVFSSMTIHFPETTSRMVLQFESSNHTR
MQMHRVLKLSPSQEEELGQIQHDRYFSIISQDFRDIITGLPSFPNNSNAVFLFNQLSLEADVKFTHNMFSLTVSNASIRFIIKLDIWDELFAEYSVDPNQCWRISLSTFQ
KSLWDGGSYSSMTFLMHETRSRMVLEFHNSASPNAPSWHRELTLLPSEEVDIGEVESEKNFIIEAEDFRHIIREARKIQIAGYEEGDTDQFRISLHPMMFFLRLSYQSET
AWFCKTMDGSHTIISIPASHFNLEYVHHSTTAPQHHVLDAVFQLGQIADEANLKFSPLQFSLTASNHSLGFVASLHIWDDFFTEYSVDESLSSRISLQSFHNAMHIIREA
SPFPNDPSN