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Carg05592 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05592
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptiontRNA-specific adenosine deaminase 1 isoform X1
Genome locationCarg_Chr17:2575835..2576367
RNA-Seq ExpressionCarg05592
SyntenyCarg05592
Gene Ontology termsGO:0006382 - adenosine to inosine editing (biological process)
GO:0006396 - RNA processing (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003725 - double-stranded RNA binding (molecular function)
GO:0003726 - double-stranded RNA adenosine deaminase activity (molecular function)
GO:0008251 - tRNA-specific adenosine deaminase activity (molecular function)
InterPro domainsIPR002466 - Adenosine deaminase/editase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575167.1 tRNA-specific adenosine deaminase TAD1, partial [Cucurbita argyrosperma subsp. sororia]1.9e-4497.94Show/hide
Query:  MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY
        MEDCFCSSSS+ESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRF+
Subjt:  MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY

KAG7013726.1 tRNA-specific adenosine deaminase 1 [Cucurbita argyrosperma subsp. argyrosperma]1.4e-50100Show/hide
Query:  MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFYLFL
        MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFYLFL
Subjt:  MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFYLFL

Query:  RFCCFL
        RFCCFL
Subjt:  RFCCFL

XP_022959067.1 tRNA-specific adenosine deaminase 1 isoform X1 [Cucurbita moschata]8.7e-4598.97Show/hide
Query:  MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY
        MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRF+
Subjt:  MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY

XP_022959069.1 tRNA-specific adenosine deaminase 1 isoform X2 [Cucurbita moschata]8.7e-4598.97Show/hide
Query:  MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY
        MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRF+
Subjt:  MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY

XP_023547601.1 LOW QUALITY PROTEIN: tRNA-specific adenosine deaminase 1 [Cucurbita pepo subsp. pepo]1.3e-4395.88Show/hide
Query:  MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY
        MEDCFCSSSSSESWGETISEK+FS+YNSLPKKGKPQGREVTVLAAFLVSSPSAQ LEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRF+
Subjt:  MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY

TrEMBL top hitse value%identityAlignment
A0A0A0KCY7 A to I editase domain-containing protein4.7e-3688.76Show/hide
Query:  SSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY
        SS E WGETISEKV S+YN+LPKKGKPQGREVTVLAAFL+SSPS QDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAE++ARRALMRF+
Subjt:  SSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY

A0A6J1H3J2 tRNA-specific adenosine deaminase 1 isoform X14.2e-4598.97Show/hide
Query:  MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY
        MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRF+
Subjt:  MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY

A0A6J1H6X3 tRNA-specific adenosine deaminase 1 isoform X24.2e-4598.97Show/hide
Query:  MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY
        MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRF+
Subjt:  MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY

A0A6J1KY57 tRNA-specific adenosine deaminase 1 isoform X27.9e-4495.88Show/hide
Query:  MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY
        MEDCFCSS SSESWGET+SEKVFSLYNSLPKKGKPQG EVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRF+
Subjt:  MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY

A0A6J1L0J0 tRNA-specific adenosine deaminase 1 isoform X17.9e-4495.88Show/hide
Query:  MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY
        MEDCFCSS SSESWGET+SEKVFSLYNSLPKKGKPQG EVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRF+
Subjt:  MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY

SwissProt top hitse value%identityAlignment
F4HU58 tRNA-specific adenosine deaminase TAD11.1e-2974.42Show/hide
Query:  ESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY
        E WG+T+SEKV S Y SLPKKGKPQGREVTVL+AFLVSSPS QD +V+ALGTGTKC+  S LS  GD+VNDSHAE++ARRAL+RF+
Subjt:  ESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY

Q4R7N3 tRNA-specific adenosine deaminase 13.1e-1349.4Show/hide
Query:  LPKKGKPQ-GREVTVLAAFL-VSSPSAQDL-----------EVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFYL
        LPKKGKP+   E T+LAA + + SP+ QD            EVV++GTGTKC+G+S++  +GD++NDSHAE+IARR   R+ L
Subjt:  LPKKGKPQ-GREVTVLAAFL-VSSPSAQDL-----------EVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFYL

Q9BUB4 tRNA-specific adenosine deaminase 19.1e-1348.19Show/hide
Query:  LPKKGKPQ-GREVTVLAAFL-VSSPSAQ-----------DLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFYL
        LPKKGKP+   E T+LAA + + SP+ +             EVV++GTGTKC+G+S++  NGD++NDSHAE+IARR+  R+ L
Subjt:  LPKKGKPQ-GREVTVLAAFL-VSSPSAQ-----------DLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFYL

Q9JHI2 tRNA-specific adenosine deaminase 12.4e-1344.33Show/hide
Query:  ETISEKVFSLYN-SLPKKGKPQ-GREVTVLAAFLVSSPSAQDL------------EVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFYL
        + I++  ++ YN  LPK+GKP+  RE T+LAA +    SA               EVV++GTGTKC+G+S++  +GD++NDSHAEIIARR+  R+ L
Subjt:  ETISEKVFSLYN-SLPKKGKPQ-GREVTVLAAFLVSSPSAQDL------------EVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFYL

Q9V3R6 tRNA-specific adenosine deaminase 11.1e-1344.3Show/hide
Query:  ISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRF
        I+E     + SLPK GKP   + T+LA  +  + + +  ++V+LG GTKC+G S+L  NG ++NDSHAE++ARR  +RF
Subjt:  ISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRF

Arabidopsis top hitse value%identityAlignment
AT1G01760.1 adenosine deaminases;RNA binding;RNA binding;adenosine deaminases7.6e-3174.42Show/hide
Query:  ESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY
        E WG+T+SEKV S Y SLPKKGKPQGREVTVL+AFLVSSPS QD +V+ALGTGTKC+  S LS  GD+VNDSHAE++ARRAL+RF+
Subjt:  ESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATTGCTTCTGTTCATCCTCTTCTTCGGAGAGCTGGGGAGAGACGATTTCGGAGAAGGTATTCTCTCTCTACAACTCTCTCCCAAAGAAAGGCAAGCCTCAGGG
TCGTGAAGTCACTGTATTGGCTGCATTTCTCGTTTCATCTCCTTCCGCACAAGATTTGGAAGTTGTGGCGTTAGGGACGGGGACTAAGTGTCTCGGTCGCTCGCAGTTAA
GCTCAAATGGTGACGTTGTGAATGATTCACACGCCGAAATAATTGCTCGGAGAGCTTTAATGAGGTTTTACTTATTTCTGCGTTTTTGTTGCTTTCTTTGA
mRNA sequenceShow/hide mRNA sequence
AGAGGAAGGAAAAATGGAGGATTGCTTCTGTTCATCCTCTTCTTCGGAGAGCTGGGGAGAGACGATTTCGGAGAAGGTATTCTCTCTCTACAACTCTCTCCCAAAGAAAG
GCAAGCCTCAGGGTCGTGAAGTCACTGTATTGGCTGCATTTCTCGTTTCATCTCCTTCCGCACAAGATTTGGAAGTTGTGGCGTTAGGGACGGGGACTAAGTGTCTCGGT
CGCTCGCAGTTAAGCTCAAATGGTGACGTTGTGAATGATTCACACGCCGAAATAATTGCTCGGAGAGCTTTAATGAGGTTTTACTTATTTCTGCGTTTTTGTTGCTTTCT
TTGA
Protein sequenceShow/hide protein sequence
MEDCFCSSSSSESWGETISEKVFSLYNSLPKKGKPQGREVTVLAAFLVSSPSAQDLEVVALGTGTKCLGRSQLSSNGDVVNDSHAEIIARRALMRFYLFLRFCCFL