; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg05683 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05683
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRNase H domain-containing protein
Genome locationCarg_Chr16:3812014..3818245
RNA-Seq ExpressionCarg05683
SyntenyCarg05683
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588976.1 hypothetical protein SDJN03_17541, partial [Cucurbita argyrosperma subsp. sororia]4.0e-15096.17Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP
        MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
        KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL

Query:  KHALKSGFKHIS-----------VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK
        KHALKSGFKHIS           VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK
Subjt:  KHALKSGFKHIS-----------VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK

KAG7015252.1 hypothetical protein SDJN02_22886 [Cucurbita argyrosperma subsp. argyrosperma]1.1e-152100Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP
        MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
        KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL

Query:  KHALKSGFKHISVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK
        KHALKSGFKHISVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK
Subjt:  KHALKSGFKHISVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK

XP_022928161.1 uncharacterized protein LOC111435064 [Cucurbita moschata]9.8e-14995.12Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP
        MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYE+PSSTRG+MAEEYP
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
        KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL

Query:  KHALKSGFKHIS-----------VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK
        KHALKSGFKHIS           VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAI+LRDGIVVEDCKHK
Subjt:  KHALKSGFKHIS-----------VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK

XP_022989146.1 uncharacterized protein LOC111486303 [Cucurbita maxima]2.4e-14794.43Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP
        MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYE+PSSTRGKMAEEYP
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
        KAKRQRNVENTESGFV AD+VSTDS KQEITRDH SEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL

Query:  KHALKSGFKHIS-----------VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK
        KHALKSGFKHIS           VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK
Subjt:  KHALKSGFKHIS-----------VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK

XP_023529762.1 uncharacterized protein LOC111792488 [Cucurbita pepo subsp. pepo]1.2e-14694.08Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP
        MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGL+SATYSISAANVTNDLFGKLLACPYE+PSST GKMAEEYP
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
        KAKRQRNVENTESGFVG DLVSTDS KQEITRDH SEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL

Query:  KHALKSGFKHIS-----------VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK
        KHALKSGFKHIS           VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK
Subjt:  KHALKSGFKHIS-----------VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK

TrEMBL top hitse value%identityAlignment
A0A0A0LHV8 RNase H domain-containing protein1.7e-9868.51Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLAC-PYEEPSSTRGKMAEEY
        MEGDKDAYYVV KGDVFGFYR+ KEL    G   FDP+ATIYKGYHLSKE+E+YL +HGL+SATYSISAANVT DLFGK+L C PYE+PS+TRGKMAEEY
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLAC-PYEEPSSTRGKMAEEY

Query:  PKAKRQRNV-ENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVIL
         KA+RQ  V ENTE                                  YFLEFDGASKGNPGLAGAGAVLRANDG+T+C+LQEGVGIAT NVAEYRAVIL
Subjt:  PKAKRQRNV-ENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVIL

Query:  GLKHALKSGFKHI-----------SVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK
        GLKHALK+G KHI            VQGLWKLKN NMA  CKVAK+LKDKFVSFEI+H PR+QNSDADALAN AI L+DG+VVEDC HK
Subjt:  GLKHALKSGFKHI-----------SVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK

A0A1S3B7N6 uncharacterized protein LOC103487060 isoform X14.0e-10370.24Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLAC-PYEEPSSTRGKMAEEY
        MEGDKDAYYVV+KGDVFGFYRS KEL  Q G   FDPNATIYKGYHLSKE+E+YL SHGL+SATYSISAANVT DLFGK+L C PYE+PS+TRGKMAEEY
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLAC-PYEEPSSTRGKMAEEY

Query:  PKAKRQRNV-ENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVIL
        PKA+RQ  V +NTE                                  YFLEFDGASKGNPGLAGAGA+LRANDG+T+CRLQEGVGIAT NVAEYRA+IL
Subjt:  PKAKRQRNV-ENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVIL

Query:  GLKHALKSGFKHI-----------SVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK
        GLKHALK+G KHI            VQGLWKLKNQNMA LCKVAK+LKDKFVSFEI+H+PR +NSDADALANRAI+L+DG+VVEDC HK
Subjt:  GLKHALKSGFKHI-----------SVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK

A0A6J1D7M4 uncharacterized protein LOC1110183846.5e-10660.05Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP
        MEGDKDAYYVV+KG V GFY+S KE EAQ G  IFDPNATIYKGYHLSKE+EQYLASHGL+SATYSISAANVT DLFGKLLAC YE+PSS RG+  EE  
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP

Query:  KAKRQRNVEN-TESGFVGADLVSTDSSKQEITRDHVSEAVPASS--------------------------------------------------------
         A R   V    E GFVGA+ VSTDS KQEI  DH  EAVPASS                                                        
Subjt:  KAKRQRNVEN-TESGFVGADLVSTDSSKQEITRDHVSEAVPASS--------------------------------------------------------

Query:  -----------------------------SRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHI---
                                     S+ YFLEFDGASKGNPGLAGAGAVLRA DG+T+CRLQEGVGIATNNVAEYRAVILGLKHALK+GFKHI   
Subjt:  -----------------------------SRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHI---

Query:  --------SVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK
                 VQGLWK+KN NM  LCKVAK+LKDKF SFEI+HIPREQNSDADALANRAI+LRDG+VVEDCKHK
Subjt:  --------SVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK

A0A6J1EJI9 uncharacterized protein LOC1114350644.8e-14995.12Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP
        MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYE+PSSTRG+MAEEYP
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
        KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL

Query:  KHALKSGFKHIS-----------VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK
        KHALKSGFKHIS           VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAI+LRDGIVVEDCKHK
Subjt:  KHALKSGFKHIS-----------VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK

A0A6J1JJ82 uncharacterized protein LOC1114863031.2e-14794.43Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP
        MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYE+PSSTRGKMAEEYP
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
        KAKRQRNVENTESGFV AD+VSTDS KQEITRDH SEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL

Query:  KHALKSGFKHIS-----------VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK
        KHALKSGFKHIS           VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK
Subjt:  KHALKSGFKHIS-----------VQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK

SwissProt top hitse value%identityAlignment
P54162 14.7 kDa ribonuclease H-like protein5.7e-0632Show/hide
Query:  DGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVQ----------GLWKLKNQNMATLCKVAKDLKDKFVSF
        DGAS GNPG +G G  ++         +   +G+ TN  AE+ A+I G+K     G++ +S +           L  +KN       +    LK  F  F
Subjt:  DGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVQ----------GLWKLKNQNMATLCKVAKDLKDKFVSF

Query:  EINHIPREQNSDADALANRAIYLRD
         I  IP +QN  AD LA  AI L +
Subjt:  EINHIPREQNSDADALANRAIYLRD

P64956 Uncharacterized protein Mb2253c1.9e-1438.89Show/hide
Query:  LEFDGASKGNPGLAGAGAVL-RANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISV-----------QGLWKLKNQNMATLCKVAKDLKD
        +E DG S+GNPG AG GAV+  A+  T +   ++ +G ATNNVAEYR +I GL  A+K G    +V            G WK+K+ ++  L   A+ L  
Subjt:  LEFDGASKGNPGLAGAGAVL-RANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISV-----------QGLWKLKNQNMATLCKVAKDLKD

Query:  KFVSFEINHIPREQNSDADALANRAI
        +F       +PR +N+ AD LAN A+
Subjt:  KFVSFEINHIPREQNSDADALANRAI

P9WLH4 Uncharacterized protein MT22871.9e-1438.89Show/hide
Query:  LEFDGASKGNPGLAGAGAVL-RANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISV-----------QGLWKLKNQNMATLCKVAKDLKD
        +E DG S+GNPG AG GAV+  A+  T +   ++ +G ATNNVAEYR +I GL  A+K G    +V            G WK+K+ ++  L   A+ L  
Subjt:  LEFDGASKGNPGLAGAGAVL-RANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISV-----------QGLWKLKNQNMATLCKVAKDLKD

Query:  KFVSFEINHIPREQNSDADALANRAI
        +F       +PR +N+ AD LAN A+
Subjt:  KFVSFEINHIPREQNSDADALANRAI

P9WLH5 Bifunctional protein Rv2228c1.9e-1438.89Show/hide
Query:  LEFDGASKGNPGLAGAGAVL-RANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISV-----------QGLWKLKNQNMATLCKVAKDLKD
        +E DG S+GNPG AG GAV+  A+  T +   ++ +G ATNNVAEYR +I GL  A+K G    +V            G WK+K+ ++  L   A+ L  
Subjt:  LEFDGASKGNPGLAGAGAVL-RANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISV-----------QGLWKLKNQNMATLCKVAKDLKD

Query:  KFVSFEINHIPREQNSDADALANRAI
        +F       +PR +N+ AD LAN A+
Subjt:  KFVSFEINHIPREQNSDADALANRAI

Q9HSF6 Ribonuclease HI2.1e-1338.21Show/hide
Query:  FDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVQ-----------GLWKLKNQNMATLCKVAKDLKDKFV
        FDGAS+GNPG A  G VL + DG  +    + +G ATNN AEY A+I  L+ A   GF  I ++           G W   + ++      A++L   F 
Subjt:  FDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVQ-----------GLWKLKNQNMATLCKVAKDLKDKFV

Query:  SFEINHIPREQNSDADALANRAI
         + I H+PR  N  ADALAN A+
Subjt:  SFEINHIPREQNSDADALANRAI

Arabidopsis top hitse value%identityAlignment
AT1G24090.1 RNase H family protein1.5e-5742.14Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP
        ++ +KDA++VVRKGDV G Y+   + +AQ GS +FD   ++YKGY L K++E+YL+S GL+   YS+ A+++ +D+FG L  C ++EP+    K++E+  
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL
         ++ +   +  +       L S   S   + +    E     S    F+EFDGASKGNPGL+GA AVL+  DG+ ICR+++G+GIATNN AEY A+ILGL
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGL

Query:  KHALKSGFKHISV-----------QGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIV
        K+A++ G+K+I V           +G WK+ ++ +A L K AK L +K VSFEI+H+ R  N+DAD  AN A+ L +G V
Subjt:  KHALKSGFKHISV-----------QGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIV

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.3e-6345.1Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP
        ME +KDA+Y+VRKGD+ G YRS  E + QAGS +  P  ++YKGY   K +E  L+S G+++A +S++A++V +D FGKL+ CP ++PSS++G+   +  
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPAS--------SSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAE
         +KR +++ + ESG        +   KQ    + +   +P+S         +    +EFDGASKGNPG AGAGAVLRA+D + +  L+EGVG ATNNVAE
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPAS--------SSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAE

Query:  YRAVILGLKHALKSGFKHI-----------SVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDG
        YRA++LGL+ AL  GFK++            VQG WK  +  MA LCK AK+L + F +F+I HI RE+NS+AD  AN AI+L DG
Subjt:  YRAVILGLKHALKSGFKHI-----------SVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDG

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.3e-6345.1Show/hide
Query:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP
        ME +KDA+Y+VRKGD+ G YRS  E + QAGS +  P  ++YKGY   K +E  L+S G+++A +S++A++V +D FGKL+ CP ++PSS++G+   +  
Subjt:  MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYP

Query:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPAS--------SSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAE
         +KR +++ + ESG        +   KQ    + +   +P+S         +    +EFDGASKGNPG AGAGAVLRA+D + +  L+EGVG ATNNVAE
Subjt:  KAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPAS--------SSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAE

Query:  YRAVILGLKHALKSGFKHI-----------SVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDG
        YRA++LGL+ AL  GFK++            VQG WK  +  MA LCK AK+L + F +F+I HI RE+NS+AD  AN AI+L DG
Subjt:  YRAVILGLKHALKSGFKHI-----------SVQGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDG

AT5G51080.1 RNase H family protein5.5e-4938.79Show/hide
Query:  DKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEE--PSSTRG--KMAEEY
        +KDA++VVRKGD+ G Y+   + +AQ GS ++DP  ++YKGY L K++E+ L++ GL+   Y   A ++  D+FG L  C +++  PS++    K+AE  
Subjt:  DKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEE--PSSTRG--KMAEEY

Query:  PKAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILG
        P A                                       +S     +EFDGASKGNPGL+GA AVL+  DG+ I ++++G+GIATNN AEY  +ILG
Subjt:  PKAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILG

Query:  LKHALKSGFKHISV-----------QGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIV
        LKHA++ G+  I V           +G WK+ ++ ++ L K AK L DK +SFEI+H+ R  NSDAD  AN A  L +G V
Subjt:  LKHALKSGFKHISV-----------QGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIV

AT5G51080.2 RNase H family protein5.5e-4938.79Show/hide
Query:  DKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEE--PSSTRG--KMAEEY
        +KDA++VVRKGD+ G Y+   + +AQ GS ++DP  ++YKGY L K++E+ L++ GL+   Y   A ++  D+FG L  C +++  PS++    K+AE  
Subjt:  DKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEE--PSSTRG--KMAEEY

Query:  PKAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILG
        P A                                       +S     +EFDGASKGNPGL+GA AVL+  DG+ I ++++G+GIATNN AEY  +ILG
Subjt:  PKAKRQRNVENTESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILG

Query:  LKHALKSGFKHISV-----------QGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIV
        LKHA++ G+  I V           +G WK+ ++ ++ L K AK L DK +SFEI+H+ R  NSDAD  AN A  L +G V
Subjt:  LKHALKSGFKHISV-----------QGLWKLKNQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGAGATAAAGATGCCTATTACGTCGTACGGAAAGGGGATGTTTTTGGATTTTACAGGAGTTTTAAGGAGCTCGAGGCTCAAGCTGGATCTCTGATATTTGATCC
TAATGCAACGATCTACAAAGGGTATCACTTATCTAAAGAATCCGAGCAGTACCTTGCATCGCATGGACTTCGAAGTGCAACTTACTCTATAAGTGCTGCTAATGTGACAA
ACGATCTATTTGGAAAACTACTTGCTTGTCCTTATGAGGAACCATCTTCTACTAGAGGAAAAATGGCAGAAGAGTACCCCAAAGCTAAGAGACAACGAAACGTTGAGAAT
ACCGAATCGGGGTTTGTAGGTGCCGACTTGGTCTCAACCGATTCTTCGAAACAAGAAATTACTCGGGATCATGTCTCTGAAGCCGTACCTGCTTCTTCAAGCCGTGTGTA
TTTTCTTGAGTTTGATGGTGCCTCAAAGGGAAATCCTGGACTAGCAGGTGCTGGAGCTGTATTACGTGCGAACGATGGAACCACGATCTGTAGGTTGCAAGAAGGGGTTG
GGATTGCTACAAATAATGTTGCTGAATATCGTGCTGTAATATTAGGACTGAAACATGCTCTAAAGAGTGGCTTTAAACACATTTCTGTTCAGGGTCTATGGAAGCTCAAA
AACCAAAATATGGCTACTTTGTGTAAAGTGGCAAAGGATCTCAAGGATAAGTTTGTGTCATTTGAGATCAACCACATCCCCAGGGAACAAAATTCCGACGCCGACGCTCT
AGCCAACCGTGCTATATATCTCCGAGATGGCATTGTAGTAGAAGACTGCAAGCATAAATGA
mRNA sequenceShow/hide mRNA sequence
ACGCTGGTTGCTCTGTCTCGCTACACTACGACAACTTTACTGATCGCTCGTGACAGCATCACTCCTTCACCAACTCTCTGCTTCTCTGCACAATTTCTCCGCCATTGCCA
CTCCTTCCATTTCTTCAGAGTAAACAATTTTCTTATTTATTTCTCTACTGTTCCTCAGGGTTCTATCATTTTATAGCTCTAGGCCACGATCATGAAGCTAGATAGCCCAA
TATGATTCTGAGTGCTCTGTTTCACTTATTTGTATTCTGGGTATTGATCATTGCCTCGTTTGTTTGTGGCATTTGAATGATGGGTTTCATTTATTGAAGATGGAGGGAGA
TAAAGATGCCTATTACGTCGTACGGAAAGGGGATGTTTTTGGATTTTACAGGAGTTTTAAGGAGCTCGAGGCTCAAGCTGGATCTCTGATATTTGATCCTAATGCAACGA
TCTACAAAGGGTATCACTTATCTAAAGAATCCGAGCAGTACCTTGCATCGCATGGACTTCGAAGTGCAACTTACTCTATAAGTGCTGCTAATGTGACAAACGATCTATTT
GGAAAACTACTTGCTTGTCCTTATGAGGAACCATCTTCTACTAGAGGAAAAATGGCAGAAGAGTACCCCAAAGCTAAGAGACAACGAAACGTTGAGAATACCGAATCGGG
GTTTGTAGGTGCCGACTTGGTCTCAACCGATTCTTCGAAACAAGAAATTACTCGGGATCATGTCTCTGAAGCCGTACCTGCTTCTTCAAGCCGTGTGTATTTTCTTGAGT
TTGATGGTGCCTCAAAGGGAAATCCTGGACTAGCAGGTGCTGGAGCTGTATTACGTGCGAACGATGGAACCACGATCTGTAGGTTGCAAGAAGGGGTTGGGATTGCTACA
AATAATGTTGCTGAATATCGTGCTGTAATATTAGGACTGAAACATGCTCTAAAGAGTGGCTTTAAACACATTTCTGTTCAGGGTCTATGGAAGCTCAAAAACCAAAATAT
GGCTACTTTGTGTAAAGTGGCAAAGGATCTCAAGGATAAGTTTGTGTCATTTGAGATCAACCACATCCCCAGGGAACAAAATTCCGACGCCGACGCTCTAGCCAACCGTG
CTATATATCTCCGAGATGGCATTGTAGTAGAAGACTGCAAGCATAAATGAACATACAATGAGCTGCCCAGCTGAAGTGCCTATATTTTGAACCATTTGATGTTAAAAATG
GCTGATTAGCATCACTAATTTTGGCTTACTATGTCCACTGGGATGCAACTTCAAGACTGTAAGCATCAAAAGCTTTATTACTATTTTGAGAGTAATGCAGAGATATAAAT
TGTAACACGATTTCTCCTTTCGAATGCGACGAACTGAGTTAGGTTATCGGGAGAAATCCTCTTTCCTTAGTTTATGCTAATCAATTGAACCTATAATTTCTGAATCTGAA
TGCCCAAAAGACCTACTAGTCGGCCACTACTGCCTACGATCTTGGAGCTTGAACAAGTTTTCGATGTTAGAGGGTGAAAAATTGCAACGCTTTTTCAAGTTTAAGGTTAA
GATCGTAAAATTGCTATGCTTATTTCATTTGGTTTCTAACTTCATTAGGACTTTGAGCGTTAATTATATTTTTTAGAAAAATGTTAATAGATATTATTCG
Protein sequenceShow/hide protein sequence
MEGDKDAYYVVRKGDVFGFYRSFKELEAQAGSLIFDPNATIYKGYHLSKESEQYLASHGLRSATYSISAANVTNDLFGKLLACPYEEPSSTRGKMAEEYPKAKRQRNVEN
TESGFVGADLVSTDSSKQEITRDHVSEAVPASSSRVYFLEFDGASKGNPGLAGAGAVLRANDGTTICRLQEGVGIATNNVAEYRAVILGLKHALKSGFKHISVQGLWKLK
NQNMATLCKVAKDLKDKFVSFEINHIPREQNSDADALANRAIYLRDGIVVEDCKHK