; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg05811 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05811
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionpolyadenylate-binding protein 2-like
Genome locationCarg_Chr16:4610355..4611165
RNA-Seq ExpressionCarg05811
SyntenyCarg05811
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637153.1 hypothetical protein CSA_004635 [Cucumis sativus]3.3e-4191.59Show/hide
Query:  EEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDS
        EEISRN+ GI  ER+MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTS SQAGKEETDS
Subjt:  EEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDS

Query:  RSVFVGN
        RSVFVGN
Subjt:  RSVFVGN

KAE8637180.1 hypothetical protein CSA_018811 [Cucumis sativus]3.3e-4191.59Show/hide
Query:  EEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDS
        EEISRN+ GI  ER+MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTS SQAGKEETDS
Subjt:  EEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDS

Query:  RSVFVGN
        RSVFVGN
Subjt:  RSVFVGN

KAG7015378.1 Polyadenylate-binding protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-59100Show/hide
Query:  AVLRIEEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGK
        AVLRIEEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGK
Subjt:  AVLRIEEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGK

Query:  EETDSRSVFVGNVRRKMSLPMFFRFKKSFLVV
        EETDSRSVFVGNVRRKMSLPMFFRFKKSFLVV
Subjt:  EETDSRSVFVGNVRRKMSLPMFFRFKKSFLVV

KGN53209.1 hypothetical protein Csa_014786 [Cucumis sativus]1.1e-4191.67Show/hide
Query:  EEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDS
        EEISRN+ GI  ER+MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTS SQAGKEETDS
Subjt:  EEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDS

Query:  RSVFVGNV
        RSVFVGNV
Subjt:  RSVFVGNV

XP_008453809.2 PREDICTED: polyadenylate-binding protein 2 isoform X1 [Cucumis melo]1.6e-4090.74Show/hide
Query:  EEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDS
        EEISRN   IA ER+MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTS  QAGKEETDS
Subjt:  EEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDS

Query:  RSVFVGNV
        RSVFVGNV
Subjt:  RSVFVGNV

TrEMBL top hitse value%identityAlignment
A0A0A0KWF2 RRM domain-containing protein5.4e-4291.67Show/hide
Query:  EEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDS
        EEISRN+ GI  ER+MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTS SQAGKEETDS
Subjt:  EEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDS

Query:  RSVFVGNV
        RSVFVGNV
Subjt:  RSVFVGNV

A0A1S3BX92 polyadenylate-binding protein 2 isoform X17.8e-4190.74Show/hide
Query:  EEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDS
        EEISRN   IA ER+MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTS  QAGKEETDS
Subjt:  EEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDS

Query:  RSVFVGNV
        RSVFVGNV
Subjt:  RSVFVGNV

A0A5D3D298 Polyadenylate-binding protein 2 isoform X17.8e-4190.74Show/hide
Query:  EEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDS
        EEISRN   IA ER+MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTS  QAGKEETDS
Subjt:  EEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDS

Query:  RSVFVGNV
        RSVFVGNV
Subjt:  RSVFVGNV

A0A6J1EN98 polyadenylate-binding protein 2-like9.6e-39100Show/hide
Query:  MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNV
        MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNV
Subjt:  MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNV

A0A6J1JCD2 polyadenylate-binding protein 2-like9.6e-39100Show/hide
Query:  MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNV
        MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNV
Subjt:  MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNV

SwissProt top hitse value%identityAlignment
Q28ZX3 Polyadenylate-binding protein 26.7e-0538.18Show/hide
Query:  EEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEM--GAVQDPAGTSTSQAGKEET
        E+IS NE  +    E    E E    EI  E E +G + +         EL+ +K R+KEMEEEA  +++MQ++V+K+M  G+    A    S   K+E 
Subjt:  EEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEM--GAVQDPAGTSTSQAGKEET

Query:  DSRSVFVGNV
        D+RSV+VGNV
Subjt:  DSRSVFVGNV

Q7KNF2 Polyadenylate-binding protein 23.3e-0437.27Show/hide
Query:  EEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEM--GAVQDPAGTSTSQAGKEET
        E+I+ NE  +    E    E E    EI  E E +G + +         EL+ +K R+KEMEEEA  +++MQ++V+K+M  G+    A    S   K+E 
Subjt:  EEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEM--GAVQDPAGTSTSQAGKEET

Query:  DSRSVFVGNV
        D+RSV+VGNV
Subjt:  DSRSVFVGNV

Q93VI4 Polyadenylate-binding protein 11.5e-1755.14Show/hide
Query:  EEEEHEVYGGEIP--VEGEMD--------GDVDMSVADDD-----AVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSR
        +E+EHEVYGGEIP   EGEMD        G+   +  D++     + ++L++MKKR+KE+EEEA ALREMQAK EK+MGA QDP+G   S A KEE DSR
Subjt:  EEEEHEVYGGEIP--VEGEMD--------GDVDMSVADDD-----AVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSR

Query:  SVFVGNV
        S++VGNV
Subjt:  SVFVGNV

Q9FJN9 Polyadenylate-binding protein 21.6e-3079Show/hide
Query:  MEEEEHEVYGGEIPVEGEMDG-------DVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNV
        MEEEEHEVYGGEIP  GEMDG       D+DM+ ADDDAVKELDEMKKRLKEME+EAAALREMQAKVEKEMGA QDPA  + +QAGKEE D+RSVFVGNV
Subjt:  MEEEEHEVYGGEIPVEGEMDG-------DVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNV

Q9LX90 Polyadenylate-binding protein 33.3e-2875Show/hide
Query:  MEEEEHEVYGGEIPVEGEM---DGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNV
        MEEEEHEVYGGEIP  G+    D D+DMS AD+DAV EL EMK+RLKEMEEEAAALREMQAKVEKEMGA QDPA  + +Q GKEE D+RSV+VGNV
Subjt:  MEEEEHEVYGGEIPVEGEM---DGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNV

Arabidopsis top hitse value%identityAlignment
AT5G10350.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.3e-2975Show/hide
Query:  MEEEEHEVYGGEIPVEGEM---DGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNV
        MEEEEHEVYGGEIP  G+    D D+DMS AD+DAV EL EMK+RLKEMEEEAAALREMQAKVEKEMGA QDPA  + +Q GKEE D+RSV+VGNV
Subjt:  MEEEEHEVYGGEIPVEGEM---DGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNV

AT5G10350.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.3e-2975Show/hide
Query:  MEEEEHEVYGGEIPVEGEM---DGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNV
        MEEEEHEVYGGEIP  G+    D D+DMS AD+DAV EL EMK+RLKEMEEEAAALREMQAKVEKEMGA QDPA  + +Q GKEE D+RSV+VGNV
Subjt:  MEEEEHEVYGGEIPVEGEM---DGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNV

AT5G51120.1 polyadenylate-binding protein 11.1e-1855.14Show/hide
Query:  EEEEHEVYGGEIP--VEGEMD--------GDVDMSVADDD-----AVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSR
        +E+EHEVYGGEIP   EGEMD        G+   +  D++     + ++L++MKKR+KE+EEEA ALREMQAK EK+MGA QDP+G   S A KEE DSR
Subjt:  EEEEHEVYGGEIP--VEGEMD--------GDVDMSVADDD-----AVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSR

Query:  SVFVGNV
        S++VGNV
Subjt:  SVFVGNV

AT5G51120.2 polyadenylate-binding protein 14.4e-1238.89Show/hide
Query:  EEEEHEVYGGEIP--VEGEMD--------GDVDMSVADDD-----AVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQ------------------
        +E+EHEVYGGEIP   EGEMD        G+   +  D++     + ++L++MKKR+KE+EEEA ALREMQAK EK+MGA Q                  
Subjt:  EEEEHEVYGGEIP--VEGEMD--------GDVDMSVADDD-----AVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQ------------------

Query:  -------------------DPAGTSTSQAGKEETDSRSVFVGNV
                           +   +  S A KEE DSRS++VGNV
Subjt:  -------------------DPAGTSTSQAGKEETDSRSVFVGNV

AT5G65260.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-3179Show/hide
Query:  MEEEEHEVYGGEIPVEGEMDG-------DVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNV
        MEEEEHEVYGGEIP  GEMDG       D+DM+ ADDDAVKELDEMKKRLKEME+EAAALREMQAKVEKEMGA QDPA  + +QAGKEE D+RSVFVGNV
Subjt:  MEEEEHEVYGGEIPVEGEMDG-------DVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFVGNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCAGTTCTACGCATCGAGGAGATTTCTAGAAACGAAGGCGGAATTGCGAGGGAAAGGGAGATGGAGGAAGAAGAGCACGAGGTATACGGTGGAGAGATCCCAGTTGAAGG
GGAGATGGACGGAGACGTTGACATGTCAGTCGCCGATGACGACGCCGTCAAGGAGCTTGACGAGATGAAAAAGCGTTTGAAGGAGATGGAGGAGGAAGCAGCGGCTCTCC
GAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCCGTCCAAGATCCTGCTGGTACATCAACTAGTCAAGCAGGCAAGGAGGAGACTGACTCACGATCTGTATTTGTC
GGCAATGTGAGAAGAAAAATGTCCCTACCGATGTTCTTTAGATTCAAGAAAAGCTTTTTAGTTGTTTGA
mRNA sequenceShow/hide mRNA sequence
GCAGTTCTACGCATCGAGGAGATTTCTAGAAACGAAGGCGGAATTGCGAGGGAAAGGGAGATGGAGGAAGAAGAGCACGAGGTATACGGTGGAGAGATCCCAGTTGAAGG
GGAGATGGACGGAGACGTTGACATGTCAGTCGCCGATGACGACGCCGTCAAGGAGCTTGACGAGATGAAAAAGCGTTTGAAGGAGATGGAGGAGGAAGCAGCGGCTCTCC
GAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCCGTCCAAGATCCTGCTGGTACATCAACTAGTCAAGCAGGCAAGGAGGAGACTGACTCACGATCTGTATTTGTC
GGCAATGTGAGAAGAAAAATGTCCCTACCGATGTTCTTTAGATTCAAGAAAAGCTTTTTAGTTGTTTGA
Protein sequenceShow/hide protein sequence
AVLRIEEISRNEGGIAREREMEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSTSQAGKEETDSRSVFV
GNVRRKMSLPMFFRFKKSFLVV