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Carg05815 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05815
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTetratricopeptide-like helical
Genome locationCarg_Chr16:4631784..4632218
RNA-Seq ExpressionCarg05815
SyntenyCarg05815
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]2.3e-1276.47Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETA
        MSVSLEALAMAGI SNEWAMDA+EWER+E+ NDVPPHLL +ED+D+D+ T+
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETA

KAG7015382.1 hypothetical protein SDJN02_23017, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-31100Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITTLSKIQQFQSHRFSLECLK
        MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITTLSKIQQFQSHRFSLECLK
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITTLSKIQQFQSHRFSLECLK

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-1276.47Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETA
        MSVSLEALAMAGI SNEWAMDA+EWER+E+ NDVPPHLL +ED+D+D+ T+
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETA

TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]1.6e-1067.86Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITTLS
        MSVSLEALAMAGIDSNEW MDA+EWER+E ++ VPPHLL +E++D D E   +T+S
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITTLS

XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]6.6e-1277.08Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDD
        MSVSLEALAMAGIDSNEWAMDA+EWER+EM  D+PPHLL +ED++ D+
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDD

TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein1.1e-0768Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERD--EMVND--VPPHLLVEEDNDN
        M VSLEALAMAGIDSNEWAMDA+EW+ +  +M ND  +PPHLL +ED +N
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERD--EMVND--VPPHLLVEEDNDN

A0A0A0KWE7 Uncharacterized protein4.6e-1170.37Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITT
        MSVSLEALAMAGIDSNEWAMDA+EWER+E ++ VPPHLL +E++D D +  +TT
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITT

A0A5A7TS68 Tetratricopeptide-like helical7.8e-1167.86Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITTLS
        MSVSLEALAMAGIDSNEW MDA+EWER+E ++ VPPHLL +E++D D E   +T+S
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITTLS

A0A5D3CZU0 Tetratricopeptide-like helical7.8e-1167.86Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITTLS
        MSVSLEALAMAGIDSNEW MDA+EWER+E ++ VPPHLL +E++D D E   +T+S
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITTLS

A0A6J1FX98 uncharacterized protein LOC1114478803.2e-1277.08Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDD
        MSVSLEALAMAGIDSNEWAMDA+EWER+EM  D+PPHLL +ED++ D+
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein4.9e-0545.45Show/hide
Query:  LEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVE-----------EDNDNDD
        +EALAMAG+D  EW +  +EWE  E V  VP HLL +           +DND+DD
Subjt:  LEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVE-----------EDNDNDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCTGGGATTGATTCTAATGAGTGGGCTATGGATGCTAAAGAATGGGAACGAGACGAAATGGTGAACGACGTTCCTCCACA
TTTATTAGTTGAAGAAGACAACGACAACGACGACGAAACCGCTATAACAACATTGAGTAAGATACAACAGTTCCAGTCCCACCGGTTTTCACTAGAGTGCCTTAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCTGGGATTGATTCTAATGAGTGGGCTATGGATGCTAAAGAATGGGAACGAGACGAAATGGTGAACGACGTTCCTCCACA
TTTATTAGTTGAAGAAGACAACGACAACGACGACGAAACCGCTATAACAACATTGAGTAAGATACAACAGTTCCAGTCCCACCGGTTTTCACTAGAGTGCCTTAAGTAG
Protein sequenceShow/hide protein sequence
MSVSLEALAMAGIDSNEWAMDAKEWERDEMVNDVPPHLLVEEDNDNDDETAITTLSKIQQFQSHRFSLECLK