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Carg05816 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05816
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTetratricopeptide-like helical
Genome locationCarg_Chr16:4634976..4635371
RNA-Seq ExpressionCarg05816
SyntenyCarg05816
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044707.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]4.7e-3270.94Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN--VTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNG
        MSVSLEALAMAGI SNEW MDA+EWERNEI+  VPPHLLADE+DD+D   VTST+SNY F V G F    R D  AD  H   GI  SLSK +EKRASNG
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN--VTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNG

Query:  MSSVRIIVRTILGFLLV
        M+SVRIIVRTILGFL+V
Subjt:  MSSVRIIVRTILGFLLV

KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]7.9e-6498.47Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS
        MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSL REDGGA DIHCFWGILCSLSKSLEKRASNGMS
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS

Query:  SVRIIVRTILGFLLVKILKIISAHTSNMIIP
        SVRIIVRTILGFLLVKILKIISAHTSNMIIP
Subjt:  SVRIIVRTILGFLLVKILKIISAHTSNMIIP

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-65100Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS
        MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS

Query:  SVRIIVRTILGFLLVKILKIISAHTSNMIIP
        SVRIIVRTILGFLLVKILKIISAHTSNMIIP
Subjt:  SVRIIVRTILGFLLVKILKIISAHTSNMIIP

TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]6.5e-3468.46Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN--VTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNG
        MSVSLEALAMAGI SNEW MDA+EWERNEI+  VPPHLLADE+DD+D   VTST+SNY F V G F    R D  AD      GI  SLSK +EKRASNG
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN--VTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNG

Query:  MSSVRIIVRTILGFLLVKILKIISAHTSNM
        M+SVRIIVRTILGFL+V  +KIISA  S M
Subjt:  MSSVRIIVRTILGFLLVKILKIISAHTSNM

XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]2.0e-2251.59Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS
        MSVSLEALAMAGI SNEWAMDAEEWERNE+E D+PPHLLADEDD++D +++      FP      S  R+D G   + C   I+  L K  EKR  N +S
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS

Query:  SVRIIVRTILGFLLVKILKIISAHTS
        S+ I+   ++GFL+   +KII++  S
Subjt:  SVRIIVRTILGFLLVKILKIISAHTS

TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein6.4e-1149Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWERN--EIEND--VPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRAS
        M VSLEALAMAGI SNEWAMDAEEW+ N  ++END  +PPHLLADED+++      ++     ++G     HR+D G      F      L K +EKRAS
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWERN--EIEND--VPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRAS

A0A0A0KWE7 Uncharacterized protein7.5e-3669.4Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN----VTSTVSNYSFPVAGFFDSLHREDGGAD--DIHCFWGILCSLSKSLEKR
        MSVSLEALAMAGI SNEWAMDAEEWERNEI+  VPPHLLADE+DD+D      TST+SNY FPV G F+     D  AD    H   GI CSLSK +EKR
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN----VTSTVSNYSFPVAGFFDSLHREDGGAD--DIHCFWGILCSLSKSLEKR

Query:  ASNGMSSVRIIVRTILGFLLVKILKIISAHTSNM
        ASNGMSSVRIIVRTILGFL+V  +KIISA  S M
Subjt:  ASNGMSSVRIIVRTILGFLLVKILKIISAHTSNM

A0A5A7TS68 Tetratricopeptide-like helical2.3e-3270.94Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN--VTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNG
        MSVSLEALAMAGI SNEW MDA+EWERNEI+  VPPHLLADE+DD+D   VTST+SNY F V G F    R D  AD  H   GI  SLSK +EKRASNG
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN--VTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNG

Query:  MSSVRIIVRTILGFLLV
        M+SVRIIVRTILGFL+V
Subjt:  MSSVRIIVRTILGFLLV

A0A5D3CZU0 Tetratricopeptide-like helical3.2e-3468.46Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN--VTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNG
        MSVSLEALAMAGI SNEW MDA+EWERNEI+  VPPHLLADE+DD+D   VTST+SNY F V G F    R D  AD      GI  SLSK +EKRASNG
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN--VTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNG

Query:  MSSVRIIVRTILGFLLVKILKIISAHTSNM
        M+SVRIIVRTILGFL+V  +KIISA  S M
Subjt:  MSSVRIIVRTILGFLLVKILKIISAHTSNM

A0A6J1FX98 uncharacterized protein LOC1114478809.5e-2351.59Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS
        MSVSLEALAMAGI SNEWAMDAEEWERNE+E D+PPHLLADEDD++D +++      FP      S  R+D G   + C   I+  L K  EKR  N +S
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS

Query:  SVRIIVRTILGFLLVKILKIISAHTS
        S+ I+   ++GFL+   +KII++  S
Subjt:  SVRIIVRTILGFLLVKILKIISAHTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein5.7e-0445.61Show/hide
Query:  LEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLAD------------EDDDDDNV
        +EALAMAG+   EW +  EEWE    E+ VP HLLAD            ++DDDD V
Subjt:  LEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLAD------------EDDDDDNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCGGGGATTACTTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACGAAACGAAATCGAGAACGACGTTCCACCGCA
TTTATTAGCCGATGAAGACGACGATGACGATAACGTAACGAGTACTGTCAGCAATTATAGCTTCCCGGTCGCTGGATTCTTCGATAGCTTGCATCGGGAAGATGGCGGAG
CCGACGATATCCATTGCTTCTGGGGGATCTTGTGTAGCTTAAGCAAAAGCTTAGAGAAGAGGGCTTCTAATGGGATGAGTTCAGTGAGAATCATTGTGAGAACTATTTTA
GGGTTTCTACTGGTGAAGATCTTGAAGATCATTAGTGCACACACATCCAACATGATTATTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCGGGGATTACTTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACGAAACGAAATCGAGAACGACGTTCCACCGCA
TTTATTAGCCGATGAAGACGACGATGACGATAACGTAACGAGTACTGTCAGCAATTATAGCTTCCCGGTCGCTGGATTCTTCGATAGCTTGCATCGGGAAGATGGCGGAG
CCGACGATATCCATTGCTTCTGGGGGATCTTGTGTAGCTTAAGCAAAAGCTTAGAGAAGAGGGCTTCTAATGGGATGAGTTCAGTGAGAATCATTGTGAGAACTATTTTA
GGGTTTCTACTGGTGAAGATCTTGAAGATCATTAGTGCACACACATCCAACATGATTATTCCTTGA
Protein sequenceShow/hide protein sequence
MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTIL
GFLLVKILKIISAHTSNMIIP