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Carg05824 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05824
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L23
Genome locationCarg_Chr16:4663739..4668094
RNA-Seq ExpressionCarg05824
SyntenyCarg05824
Gene Ontology termsGO:0032543 - mitochondrial translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR013025 - Ribosomal protein L25/L23


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015390.1 rplW, partial [Cucurbita argyrosperma subsp. argyrosperma]4.2e-158100Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSVFHTLVAALSSVPSRSRVLPSAFSDRAQI
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSVFHTLVAALSSVPSRSRVLPSAFSDRAQI
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSVFHTLVAALSSVPSRSRVLPSAFSDRAQI

Query:  VKDESVEENSLFDDEFVRNHDPLVVNLLCPFRIALGIWHSSKRLRVLMSLTDEFVRNHDPLVVNVLNSFRIALKSRSSGREPGQLLPSRP
        VKDESVEENSLFDDEFVRNHDPLVVNLLCPFRIALGIWHSSKRLRVLMSLTDEFVRNHDPLVVNVLNSFRIALKSRSSGREPGQLLPSRP
Subjt:  VKDESVEENSLFDDEFVRNHDPLVVNLLCPFRIALGIWHSSKRLRVLMSLTDEFVRNHDPLVVNVLNSFRIALKSRSSGREPGQLLPSRP

XP_022929525.1 uncharacterized protein LOC111436066 [Cucurbita moschata]1.6e-88100Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS

XP_022985025.1 uncharacterized protein LOC111483116 [Cucurbita maxima]3.3e-8697.66Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFS+R RRRTGSAETVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS

XP_023531609.1 uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo]7.6e-8394.15Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE VG K YKGF++R RRR G AE VEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS

XP_023552749.1 uncharacterized protein LOC111810290 [Cucurbita pepo subsp. pepo]8.1e-8595.91Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSK SIVEEGEAKRHWLHEKEPV FK+YKGF+NR RR+TGSAET+EPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS

TrEMBL top hitse value%identityAlignment
A0A0A0L0J2 Uncharacterized protein1.2e-8191.86Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+TLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSISPD+YP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRT-GSAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVG K YKGF++R RRR+ G AETVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRT-GSAETVEPSTKFPWSSMRS

A0A5D3CZJ7 Nucleotide-binding, alpha-beta plait5.8e-8191.86Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRT-GSAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVG K YKGF++R RRR  G AETVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRT-GSAETVEPSTKFPWSSMRS

A0A6J1EUM4 uncharacterized protein LOC1114360667.6e-89100Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS

A0A6J1FSK6 uncharacterized protein LOC1114480494.0e-8293.57Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        M SRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE VG K YKGF++R RRR G AE VEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS

A0A6J1JA70 uncharacterized protein LOC1114831161.6e-8697.66Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFS+R RRRTGSAETVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS

SwissProt top hitse value%identityAlignment
A0KF23 50S ribosomal protein L233.5e-0645.76Show/hide
Query:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR
        I  K    A+K E+K  +  L+  EV+ VRTLNM GK K+ G  +  + D+KKAYVTL+
Subjt:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR

A4ST04 50S ribosomal protein L234.5e-0645.76Show/hide
Query:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR
        I  K    A+K E+K  +  L+  EV+ VRTLNM GK K+ G  +  + D+KKAYVTL+
Subjt:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR

Q0ABH3 50S ribosomal protein L234.5e-0645.76Show/hide
Query:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTL
        E+  K    A K EI++ +E L+  +V  VRT+ M GK+K+ G L   +PD+KKAYVTL
Subjt:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTL

Q0I161 50S ribosomal protein L232.7e-0642.47Show/hide
Query:  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSI
        TN TE    I  K    A+K+EI   +E L+  +VD VRT+ + GK K+RG  +  + D+KKAYVTL+   S+
Subjt:  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSI

Q605B4 50S ribosomal protein L232.0e-0641.67Show/hide
Query:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR
        +   +  P+ASK++IK  +E ++G +VD VR LN+ GK K+ G  +  + D+KKAYV L+
Subjt:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR

Arabidopsis top hitse value%identityAlignment
AT4G39880.1 Ribosomal protein L23/L15e family protein1.1e-5264.41Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLG RV+HFANLPIKLLMP   TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV TLNMDGKKKKRGGLLIAK DYKKAYVTLR+PLSIS D++P
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAY-KGFSNRDRRRTGS----AETVEPSTKFPWSSMRSV
        ++ IEED+++  K S S + EE + K HWL  KE      Y KG   R   R  S          + KFPWS+MR V
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAY-KGFSNRDRRRTGS----AETVEPSTKFPWSSMRSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGCAGACTCGGGAGAAGAGTTATTCACTTCGCTAATCTTCCAATCAAGCTTCTTATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCC
TTCTGCTTCCAAAATCGAAATCAAGCGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGTACTCTCAACATGGACGGGAAGAAAAAGAAGCGCGGAGGGC
TTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTATCAATCTCTCCGGACGTGTATCCGATCCGGATTATTGAGGAGGACAAGAGGAAT
ATGAATAAACAGTCTAAATCCAGCATTGTTGAGGAGGGCGAGGCCAAAAGGCATTGGCTACATGAGAAGGAGCCTGTTGGATTCAAAGCTTACAAGGGTTTTTCTAATAG
AGACCGCCGACGAACTGGCAGTGCTGAAACTGTTGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGGTCTGTTTTTCATACTCTTGTTGCAGCTCTGTCATCTGTGC
CTTCACGCTCTCGAGTTCTGCCTTCAGCTTTCTCCGATCGTGCTCAAATAGTAAAGGATGAGTCTGTAGAGGAGAACAGTCTCTTCGATGATGAGTTTGTTCGGAATCAC
GATCCTCTTGTCGTGAACTTGCTCTGCCCCTTCCGAATCGCTCTCGGTATTTGGCATTCCAGTAAGAGACTTCGTGTTCTTATGTCTCTCACTGATGAGTTTGTTCGGAA
TCACGATCCTCTGGTTGTGAACGTGCTCAACTCCTTCCGAATTGCTCTCAAATCACGATCCTCTGGTCGTGAACCTGGTCAGCTCCTTCCAAGTCGCCCT
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGCAGACTCGGGAGAAGAGTTATTCACTTCGCTAATCTTCCAATCAAGCTTCTTATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCC
TTCTGCTTCCAAAATCGAAATCAAGCGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGTACTCTCAACATGGACGGGAAGAAAAAGAAGCGCGGAGGGC
TTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTATCAATCTCTCCGGACGTGTATCCGATCCGGATTATTGAGGAGGACAAGAGGAAT
ATGAATAAACAGTCTAAATCCAGCATTGTTGAGGAGGGCGAGGCCAAAAGGCATTGGCTACATGAGAAGGAGCCTGTTGGATTCAAAGCTTACAAGGGTTTTTCTAATAG
AGACCGCCGACGAACTGGCAGTGCTGAAACTGTTGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGGTCTGTTTTTCATACTCTTGTTGCAGCTCTGTCATCTGTGC
CTTCACGCTCTCGAGTTCTGCCTTCAGCTTTCTCCGATCGTGCTCAAATAGTAAAGGATGAGTCTGTAGAGGAGAACAGTCTCTTCGATGATGAGTTTGTTCGGAATCAC
GATCCTCTTGTCGTGAACTTGCTCTGCCCCTTCCGAATCGCTCTCGGTATTTGGCATTCCAGTAAGAGACTTCGTGTTCTTATGTCTCTCACTGATGAGTTTGTTCGGAA
TCACGATCCTCTGGTTGTGAACGTGCTCAACTCCTTCCGAATTGCTCTCAAATCACGATCCTCTGGTCGTGAACCTGGTCAGCTCCTTCCAAGTCGCCCT
Protein sequenceShow/hide protein sequence
MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRN
MNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSVFHTLVAALSSVPSRSRVLPSAFSDRAQIVKDESVEENSLFDDEFVRNH
DPLVVNLLCPFRIALGIWHSSKRLRVLMSLTDEFVRNHDPLVVNVLNSFRIALKSRSSGREPGQLLPSRP