CuGenDBv2

Gene ID	Carg05848
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein LUTEIN DEFICIENT 5, chloroplastic
Genome location	Carg_Chr16:4839939..4840647
RNA-Seq Expression	Carg05848
Synteny	Carg05848
Gene Ontology terms	GO:0016123 - xanthophyll biosynthetic process (biological process) GO:0005506 - iron ion binding (molecular function) GO:0010291 - carotene beta-ring hydroxylase activity (molecular function) GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (molecular function) GO:0020037 - heme binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6577327.1 Protein LUTEIN DEFICIENT 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

7.9e-49

97.09

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Query:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY
        MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAG+
Subjt:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY

Query:  TSI
         S+
Subjt:  TSI

KAG7015414.1 Protein LUTEIN DEFICIENT 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

5.6e-55

100

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Query:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY
        MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY
Subjt:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY

Query:  TSICVLDPTN
        TSICVLDPTN
Subjt:  TSICVLDPTN

XP_022929344.1 protein LUTEIN DEFICIENT 5, chloroplastic [Cucurbita moschata]

8.7e-48

95.15

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Query:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY
        MAANFAMLKPCSSFSTPSFVQ KFRTHRLLCTGPSSSYYPRCQGGAYGLR+VKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAG+
Subjt:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY

Query:  TSI
         S+
Subjt:  TSI

XP_022984320.1 protein LUTEIN DEFICIENT 5, chloroplastic [Cucurbita maxima]

4.8e-46

93.2

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Query:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY
        MAANFAM KP SSFSTPSFVQ KFRTHRLLCTGPSSSYYPRCQGGAYGLR+VKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAG+
Subjt:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY

Query:  TSI
         S+
Subjt:  TSI

XP_023552789.1 protein LUTEIN DEFICIENT 5, chloroplastic [Cucurbita pepo subsp. pepo]

3.9e-48

96.12

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Query:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY
        MAANFAMLKPCSSFSTPSFVQ KFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAG+
Subjt:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY

Query:  TSI
         S+
Subjt:  TSI

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BPA6 protein LUTEIN DEFICIENT 5, chloroplastic

2.7e-34

74.76

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Query:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY
        MAANFAMLKPCSSFS  S VQ KFR HR + T P SS YP+CQ GAYGL +VKCASSNGK P+SLD+GVK VE+LL+EK+RAELSARIASGEFTVEK G+
Subjt:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY

Query:  TSI
        +S+
Subjt:  TSI

A0A5A7UWY5 Protein LUTEIN DEFICIENT 5

3.8e-33

73.79

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Query:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY
        MAANFAMLKPCSSFS  S VQ KFR HR + T   SS YP+CQ GAYGL +VKCASSNGK P+SLD+GVK VE+LL+EK+RAELSARIASGEFTVEK G+
Subjt:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY

Query:  TSI
        +S+
Subjt:  TSI

A0A6J1C4A6 protein LUTEIN DEFICIENT 5, chloroplastic

8.0e-39

80.58

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Query:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY
        MAANF MLKPCSSFST S VQ KF  HRL+CTGPSSS+YP+CQGGAYGL +VKCASSNGKEPDSLD+GVKSVE+LL+EK+RAELSARIASGEFTV K G+
Subjt:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY

Query:  TSI
         S+
Subjt:  TSI

A0A6J1ENG7 protein LUTEIN DEFICIENT 5, chloroplastic

4.2e-48

95.15

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Query:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY
        MAANFAMLKPCSSFSTPSFVQ KFRTHRLLCTGPSSSYYPRCQGGAYGLR+VKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAG+
Subjt:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY

Query:  TSI
         S+
Subjt:  TSI

A0A6J1J8B8 protein LUTEIN DEFICIENT 5, chloroplastic

2.3e-46

93.2

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Query:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY
        MAANFAM KP SSFSTPSFVQ KFRTHRLLCTGPSSSYYPRCQGGAYGLR+VKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAG+
Subjt:  MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGY

Query:  TSI
         S+
Subjt:  TSI

SwissProt top hits

e value

%identity

Alignment

Q93VK5 Protein LUTEIN DEFICIENT 5, chloroplastic

1.2e-07

56.36

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Query:  LVKCASSNGKEP---DSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGYTS
        +V  +SSNG++P   +S+ +GVKS+E+L +EK+RAELSARIASG FTV K+ + S
Subjt:  LVKCASSNGKEP---DSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGYTS

Arabidopsis top hits

e value

%identity

Alignment

AT1G31800.1 cytochrome P450, family 97, subfamily A, polypeptide 3

8.5e-09

56.36

Show/hide

Query:  LVKCASSNGKEP---DSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGYTS
        +V  +SSNG++P   +S+ +GVKS+E+L +EK+RAELSARIASG FTV K+ + S
Subjt:  LVKCASSNGKEP---DSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGYTS

Sequences

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CDS sequence

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ATGGCTGCCAATTTCGCCATGCTTAAACCTTGTTCCTCATTTTCGACCCCATCATTTGTTCAGAACAAATTTCGTACACATAGATTGTTATGCACTGGCCCATCTTCCTC
TTATTATCCACGATGTCAAGGAGGAGCTTATGGTTTACGCCTCGTTAAATGCGCTTCTTCTAATGGTAAGGAGCCTGATTCGTTGGATGATGGAGTTAAAAGTGTGGAGC
AGTTACTTAAAGAGAAACAGCGAGCAGAATTGTCTGCTCGGATCGCTTCTGGAGAATTCACAGTGGAAAAAGCTGGGTATACAAGTATTTGTGTACTAGATCCTACGAAT
TGA

mRNA sequence

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TCGTGGGCTTCTCAGGCGGAATCTTTCGAGTAATCGTTGCCGCCCAGAACCACCAAGATACCATCAGCCGTTCCTTAGTGGTTCGCACAGCGGAAAACGCCAACCAAGTT
GTCCGGCATTTATCTTTTTCACTCATTTTAGCTTCCTTTCTCTCTCTCTCTCTCTCTCTGTTTACAACTTAGCTTGCTCTGCATCTTCCACGAATTTGTTCTTCTCTTCA
TTTCCGATTCTGATATCTTAATTTTATCCAAAAACAAAGCAACCCATCTTCCATGGCTGCCAATTTCGCCATGCTTAAACCTTGTTCCTCATTTTCGACCCCATCATTTG
TTCAGAACAAATTTCGTACACATAGATTGTTATGCACTGGCCCATCTTCCTCTTATTATCCACGATGTCAAGGAGGAGCTTATGGTTTACGCCTCGTTAAATGCGCTTCT
TCTAATGGTAAGGAGCCTGATTCGTTGGATGATGGAGTTAAAAGTGTGGAGCAGTTACTTAAAGAGAAACAGCGAGCAGAATTGTCTGCTCGGATCGCTTCTGGAGAATT
CACAGTGGAAAAAGCTGGGTATACAAGTATTTGTGTACTAGATCCTACGAATTGA

Protein sequence

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MAANFAMLKPCSSFSTPSFVQNKFRTHRLLCTGPSSSYYPRCQGGAYGLRLVKCASSNGKEPDSLDDGVKSVEQLLKEKQRAELSARIASGEFTVEKAGYTSICVLDPTN

Carg05848 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome