CuGenDBv2

Gene ID	Carg05850
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cytochrome c oxidase subunit 6a, mitochondrial-like
Genome location	Carg_Chr16:4846150..4847738
RNA-Seq Expression	Carg05850
Synteny	Carg05850
Gene Ontology terms	GO:0006123 - mitochondrial electron transport, cytochrome c to oxygen (biological process) GO:0050790 - regulation of catalytic activity (biological process) GO:1902600 - proton transmembrane transport (biological process) GO:0005751 - mitochondrial respiratory chain complex IV (cellular component) GO:0004129 - cytochrome-c oxidase activity (molecular function) GO:0030234 - enzyme regulator activity (molecular function)
InterPro domains	IPR001349 - Cytochrome c oxidase, subunit VIa IPR036418 - Cytochrome c oxidase, subunit VIa superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7015416.1 Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.4e-46

100

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWGKLPRHY
        MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWGKLPRHY
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWGKLPRHY

XP_011650608.1 cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus]

7.5e-40

93.18

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG
        MAMA+IRSNLLRAA RGASRNS QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFYNLSKGHPH+EEPPAYPY+HIRNKEFPWG
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG

XP_022929363.1 cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata]

1.2e-42

100

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG
        MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG

XP_022984430.1 cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima]

2.3e-41

97.73

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG
        MAMA IRSNLLRAAFRGASRN AQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG

XP_023551866.1 cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo]

6.1e-42

98.86

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG
        MAMATIRSNLLRAA RGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BPM0 cytochrome c oxidase subunit 6a, mitochondrial

6.2e-40

93.18

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG
        MAMA+IRSN LRAA RGASRNS QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFYNLSKGHPH+EEPPAYPYLHIRNKEFPWG
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG

A0A6J1C3V4 cytochrome c oxidase subunit 6a, mitochondrial

4.7e-40

92.05

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG
        MAMATIRSNLLRAAFRGAS+NSAQPKRGFASSAHDD RETAKWEKITYAGI++C+ LAFYNLSKGHPH+EEPPAYPYLHIRNKEFPWG
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG

A0A6J1ERW3 cytochrome c oxidase subunit 6a, mitochondrial-like

6.0e-43

100

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG
        MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG

A0A6J1FPI8 cytochrome c oxidase subunit 6a, mitochondrial-like

8.0e-40

93.18

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG
        MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDA ETAKWEKITYAGI +C+ LAFYNLSKGHPH+EEPPAYPYLHIRNKEFPWG
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG

A0A6J1J8L1 cytochrome c oxidase subunit 6a, mitochondrial-like

1.1e-41

97.73

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG
        MAMA IRSNLLRAAFRGASRN AQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG

SwissProt top hits

e value

%identity

Alignment

Q9T070 Cytochrome c oxidase subunit 6a, mitochondrial

1.7e-26

67.42

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG
        MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GI SC+ LA Y LSKGH H E+PPAYP++HIRNKEFPWG
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG

Arabidopsis top hits

e value

%identity

Alignment

AT4G37830.1 cytochrome c oxidase-related

1.2e-27

67.42

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG
        MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GI SC+ LA Y LSKGH H E+PPAYP++HIRNKEFPWG
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG

AT4G37830.2 cytochrome c oxidase-related

1.6e-19

58.43

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Query:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG
        MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GI SC+ LA Y LSKGH H E+PP          EFPWG
Subjt:  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWG

Sequences

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CDS sequence

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ATGGCAATGGCGACGATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCACGAAACTCCGCTCAGCCTAAGCGCGGCTTCGCTTCCTCTGCTCACGACGATGC
TCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGTATCCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACTATGAAGAGCCCCCTG
CATATCCATATTTGCACATTCGCAATAAAGAGTTCCCATGGGGTAAGCTTCCACGTCATTACTAG

mRNA sequence

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Protein sequence

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MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFYNLSKGHPHYEEPPAYPYLHIRNKEFPWGKLPRHY

Carg05850 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome