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Carg05859 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05859
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description1-deoxy-D-xylulose-5-phosphate synthase
Genome locationCarg_Chr16:4918118..4923295
RNA-Seq ExpressionCarg05859
SyntenyCarg05859
Gene Ontology termsGO:0009228 - thiamine biosynthetic process (biological process)
GO:0016114 - terpenoid biosynthetic process (biological process)
GO:0052865 - 1-deoxy-D-xylulose 5-phosphate biosynthetic process (biological process)
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577337.1 putative 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]5.0e-1389.36Show/hide
Query:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS
        I+HGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQ+S S+KP S
Subjt:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS

KAG7015424.1 putative 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]5.0e-1389.36Show/hide
Query:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS
        I+HGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQ+S S+KP S
Subjt:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS

KAG7015425.1 putative 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-71100Show/hide
Query:  MCAQQAKYRYVLHNAAVTVTNSNGCPTKVELPAKARPTGKGVQRCANCLVGPYSHIWAVCRVYGTGFEPPLVSSPLLSGLRTGLWNPINHGSPRDQMEEA
        MCAQQAKYRYVLHNAAVTVTNSNGCPTKVELPAKARPTGKGVQRCANCLVGPYSHIWAVCRVYGTGFEPPLVSSPLLSGLRTGLWNPINHGSPRDQMEEA
Subjt:  MCAQQAKYRYVLHNAAVTVTNSNGCPTKVELPAKARPTGKGVQRCANCLVGPYSHIWAVCRVYGTGFEPPLVSSPLLSGLRTGLWNPINHGSPRDQMEEA

Query:  GLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS
        GLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS
Subjt:  GLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS

XP_022929510.1 probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucurbita moschata]2.2e-1391.49Show/hide
Query:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS
        I+HGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQ+S SRKP S
Subjt:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS

XP_022985020.1 probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucurbita maxima]2.2e-1391.49Show/hide
Query:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS
        I+HGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEAL VQ+S SRKPSS
Subjt:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS

TrEMBL top hitse value%identityAlignment
A0A0A0L869 1-deoxy-D-xylulose-5-phosphate synthase1.0e-0873.91Show/hide
Query:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPS
        I+HGSP DQMEEAGLS+ HIA TVLTL+GRSKEALS Q+S ++K S
Subjt:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPS

A0A1S3BNQ5 1-deoxy-D-xylulose-5-phosphate synthase1.6e-0976.09Show/hide
Query:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPS
        I+HG+PRDQMEEAGLS+ HIA TVLTL+GRSKEALS Q+S +RK S
Subjt:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPS

A0A5D3CJJ6 1-deoxy-D-xylulose-5-phosphate synthase1.6e-0976.09Show/hide
Query:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPS
        I+HG+PRDQMEEAGLS+ HIA TVLTL+GRSKEALS Q+S +RK S
Subjt:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPS

A0A6J1EUL0 1-deoxy-D-xylulose-5-phosphate synthase1.1e-1391.49Show/hide
Query:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS
        I+HGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQ+S SRKP S
Subjt:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS

A0A6J1JA65 1-deoxy-D-xylulose-5-phosphate synthase1.1e-1391.49Show/hide
Query:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS
        I+HGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEAL VQ+S SRKPSS
Subjt:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSVQISVSRKPSS

SwissProt top hitse value%identityAlignment
O22567 1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic3.6e-0642.65Show/hide
Query:  GFEPPLVSSPLLSGLRTG--LWNP-------INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSV
        GF   +     L GL  G   W P       I+HGSP DQ+ EAGL+  HIA TV  +LG+++EAL++
Subjt:  GFEPPLVSSPLLSGLRTG--LWNP-------INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSV

O78328 Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic9.4e-0745.59Show/hide
Query:  GFEPPLVSSPLLSGLRTG--LWNP-------INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSV
        GF   +V    L GL  G   W P       I+HGSP DQ+ EAGL+  HIA TV  +LG+++EAL V
Subjt:  GFEPPLVSSPLLSGLRTG--LWNP-------INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSV

Q38854 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic4.0e-0543.94Show/hide
Query:  GFEPPLVSSPLLSGLRTG--LWNP-------INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEAL
        GF   +V    L GL  G   W P       I+HG+P DQ+ EAGL   HIA T L L+G  +EAL
Subjt:  GFEPPLVSSPLLSGLRTG--LWNP-------INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEAL

Q6YU51 Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic1.8e-0564.86Show/hide
Query:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSV
        I+HG+P DQ+EEAGL+  HIA TVL+LLGR  EAL +
Subjt:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEALSV

Arabidopsis top hitse value%identityAlignment
AT4G15560.1 Deoxyxylulose-5-phosphate synthase2.8e-0643.94Show/hide
Query:  GFEPPLVSSPLLSGLRTG--LWNP-------INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEAL
        GF   +V    L GL  G   W P       I+HG+P DQ+ EAGL   HIA T L L+G  +EAL
Subjt:  GFEPPLVSSPLLSGLRTG--LWNP-------INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEAL

AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 32.6e-0457.14Show/hide
Query:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEAL
        I   SPR+Q+  AGL+  HIA T L+LLGR++EAL
Subjt:  INHGSPRDQMEEAGLSAGHIAGTVLTLLGRSKEAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGCTCAGCAGGCGAAGTATCGTTATGTTTTACATAATGCTGCCGTGACGGTTACTAATTCTAATGGGTGTCCGACAAAAGTTGAGCTACCAGCGAAGGCTCGCCC
GACAGGAAAAGGGGTCCAGCGGTGTGCGAACTGTTTGGTGGGTCCATACTCGCACATATGGGCTGTGTGTAGAGTATATGGAACCGGTTTCGAACCACCACTAGTGTCTT
CTCCATTATTGTCCGGCCTTAGAACGGGATTGTGGAATCCGATCAATCATGGATCACCACGAGACCAGATGGAAGAAGCGGGACTGTCGGCTGGACACATAGCTGGAACA
GTGCTAACTCTTTTGGGAAGATCAAAAGAAGCTCTTTCAGTGCAAATTTCTGTAAGCAGGAAGCCAAGCTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGCTCAGCAGGCGAAGTATCGTTATGTTTTACATAATGCTGCCGTGACGGTTACTAATTCTAATGGGTGTCCGACAAAAGTTGAGCTACCAGCGAAGGCTCGCCC
GACAGGAAAAGGGGTCCAGCGGTGTGCGAACTGTTTGGTGGGTCCATACTCGCACATATGGGCTGTGTGTAGAGTATATGGAACCGGTTTCGAACCACCACTAGTGTCTT
CTCCATTATTGTCCGGCCTTAGAACGGGATTGTGGAATCCGATCAATCATGGATCACCACGAGACCAGATGGAAGAAGCGGGACTGTCGGCTGGACACATAGCTGGAACA
GTGCTAACTCTTTTGGGAAGATCAAAAGAAGCTCTTTCAGTGCAAATTTCTGTAAGCAGGAAGCCAAGCTCTTAG
Protein sequenceShow/hide protein sequence
MCAQQAKYRYVLHNAAVTVTNSNGCPTKVELPAKARPTGKGVQRCANCLVGPYSHIWAVCRVYGTGFEPPLVSSPLLSGLRTGLWNPINHGSPRDQMEEAGLSAGHIAGT
VLTLLGRSKEALSVQISVSRKPSS