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Carg05880 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05880
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S19
Genome locationCarg_Chr04:20898459..20899715
RNA-Seq ExpressionCarg05880
SyntenyCarg05880
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001266 - Ribosomal protein S19e
IPR018277 - Ribosomal protein S19e, conserved site
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578553.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia]1.3e-7599.3Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGR+ITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

KAG6593129.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.3e-7599.3Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022923365.1 40S ribosomal protein S19-3-like [Cucurbita moschata]5.8e-76100Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022938991.1 40S ribosomal protein S19-3 [Cucurbita moschata]1.3e-7599.3Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGR+ITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022954406.1 40S ribosomal protein S19-3-like [Cucurbita moschata]1.3e-7599.3Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

TrEMBL top hitse value%identityAlignment
A0A6J1EBL3 40S ribosomal protein S19-3-like2.8e-76100Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1H7M6 40S ribosomal protein S19-3-like6.2e-7699.3Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1JTL0 40S ribosomal protein S19-3-like2.8e-76100Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1JTW8 40S ribosomal protein S19-3-like6.2e-7699.3Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1JX06 40S ribosomal protein S19-36.2e-7699.3Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGR+ITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

SwissProt top hitse value%identityAlignment
P40978 40S ribosomal protein S191.5e-6380.71Show/hide
Query:  ATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIA
        +TA+TVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYDPDWYY RAAS+ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+
Subjt:  ATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIA

Query:  RHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVV
        R+ILQQLQ+M I+DVDPKGGR ITS GRRDLDQVAGR+ V
Subjt:  RHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVV

Q94613 40S ribosomal protein S191.1e-4557.46Show/hide
Query:  TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHIL
        +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+PDWY++RAAS+ R +Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +L
Subjt:  TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHIL

Query:  QQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI
        Q L+ + IV+ DP GGRR+TS GRRDLD++A +I
Subjt:  QQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI

Q9FNP8 40S ribosomal protein S19-31.9e-6986.62Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHILQQLQ MNIVD+D KGGR+ITSSG+RDLDQVAGRI  A
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA

Q9LF30 40S ribosomal protein S19-21.0e-6787.05Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAASMARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI
        ARHILQQL+ M+IV++D KGGRRITSSG+RDLDQVAGRI
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI

Q9SGA6 40S ribosomal protein S19-12.4e-6985.31Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQL+ MNIV++D KGGRRITSSG+RDLDQVAGRI V P
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

Arabidopsis top hitse value%identityAlignment
AT3G02080.1 Ribosomal protein S19e family protein1.7e-7085.31Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQL+ MNIV++D KGGRRITSSG+RDLDQVAGRI V P
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

AT5G15520.1 Ribosomal protein S19e family protein7.3e-6987.05Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAASMARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI
        ARHILQQL+ M+IV++D KGGRRITSSG+RDLDQVAGRI
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI

AT5G61170.1 Ribosomal protein S19e family protein1.3e-7086.62Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAASMARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHILQQLQ MNIVD+D KGGR+ITSSG+RDLDQVAGRI  A
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGGCGAAGACTGTCAAGGACGTCTCTCCTCACGAATTCGTGAAAGCCTATGCGGCACATCTTAAGAGATCTGGAAAGGTTGAACTTCCTCCATGGACTGATAT
AGTTAAAACTGCAAGATTCAAAGAGCTTGCTCCTTATGACCCTGATTGGTATTATGTGAGAGCTGCCTCCATGGCTAGGAAAATCTATTTGAGGGGAGGTCTCGGTGTGG
GGGCTTTTAAGAGGATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTCTGTGAGAGCAGTGGTGCTATTGCCCGTCACATTTTACAACAGTTGCAGGAA
ATGAATATTGTTGATGTCGATCCCAAGGGTGGCAGGAGAATCACATCAAGCGGCCGACGGGATCTTGACCAAGTTGCTGGCCGGATTGTTGTTGCCCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACGGCGAAGACTGTCAAGGACGTCTCTCCTCACGAATTCGTGAAAGCCTATGCGGCACATCTTAAGAGATCTGGAAAGGTTGAACTTCCTCCATGGACTGATAT
AGTTAAAACTGCAAGATTCAAAGAGCTTGCTCCTTATGACCCTGATTGGTATTATGTGAGAGCTGCCTCCATGGCTAGGAAAATCTATTTGAGGGGAGGTCTCGGTGTGG
GGGCTTTTAAGAGGATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTCTGTGAGAGCAGTGGTGCTATTGCCCGTCACATTTTACAACAGTTGCAGGAA
ATGAATATTGTTGATGTCGATCCCAAGGGTGGCAGGAGAATCACATCAAGCGGCCGACGGGATCTTGACCAAGTTGCTGGCCGGATTGTTGTTGCCCCTTGA
Protein sequenceShow/hide protein sequence
MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQE
MNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP