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Carg05894 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05894
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor MYB59-like
Genome locationCarg_Chr04:20979848..20980833
RNA-Seq ExpressionCarg05894
SyntenyCarg05894
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0010597 - green leaf volatile biosynthetic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044676 - MYB-like transcription factor EOBI/EOBII-like, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602540.1 Transcription factor MYB59, partial [Cucurbita argyrosperma subsp. sororia]1.5e-5057.84Show/hide
Query:  MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVAT--------------------------------------------------------------
        MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVAT                                                              
Subjt:  MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVAT--------------------------------------------------------------

Query:  ------------------------DIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDS
                                DIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDS
Subjt:  ------------------------DIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDS

Query:  NNLL
        NNLL
Subjt:  NNLL

KAG7033217.1 Transcription factor MYB23, partial [Cucurbita argyrosperma subsp. argyrosperma]8.7e-62100Show/hide
Query:  MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATDIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAA
        MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATDIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAA
Subjt:  MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATDIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAA

Query:  AEESYLWGGLWEDSNNLL
        AEESYLWGGLWEDSNNLL
Subjt:  AEESYLWGGLWEDSNNLL

XP_022954581.1 transcription factor MYB59-like [Cucurbita moschata]6.5e-4956.86Show/hide
Query:  MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVAT--------------------------------------------------------------
        MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVAT                                                              
Subjt:  MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVAT--------------------------------------------------------------

Query:  ------------------------DIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDS
                                D KTSPPISFEQDREEKDMMKPC RDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDS
Subjt:  ------------------------DIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDS

Query:  NNLL
        NNLL
Subjt:  NNLL

XP_022990755.1 transcription factor MYB59-like [Cucurbita maxima]1.0e-4655.88Show/hide
Query:  MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVAT--------------------------------------------------------------
        MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVAT                                                              
Subjt:  MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVAT--------------------------------------------------------------

Query:  ------------------------DIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDS
                                D KTS PISFEQDREEKDMMK CERDN ELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDS
Subjt:  ------------------------DIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDS

Query:  NNLL
        NNLL
Subjt:  NNLL

XP_023554284.1 transcription factor MYB59-like [Cucurbita pepo subsp. pepo]1.9e-4856.86Show/hide
Query:  MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVAT--------------------------------------------------------------
        MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVAT                                                              
Subjt:  MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVAT--------------------------------------------------------------

Query:  ------------------------DIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDS
                                D KTSPPISFEQDREEKDMMKP ERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDS
Subjt:  ------------------------DIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDS

Query:  NNLL
        NNLL
Subjt:  NNLL

TrEMBL top hitse value%identityAlignment
A0A0A0KSK2 Uncharacterized protein1.6e-1332.16Show/hide
Query:  EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA------------------------------------------------------------------
        EE+EWRKGPWT +EDKLL EYVKVHGEGRW SVA                                                                  
Subjt:  EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA------------------------------------------------------------------

Query:  --------------------TDIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQS--YLSMVYEDFATWAAAAAAEESYLW--GGLWE
                            TD KT PP++   +    ++MKP + DN++L MVFTEP AM   +   YLSMVY+D   WAA    E  + W  GG  E
Subjt:  --------------------TDIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQS--YLSMVYEDFATWAAAAAAEESYLW--GGLWE

A0A1S3CAT1 transcription factor MYB59-like6.6e-1533.65Show/hide
Query:  EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA------------------------------------------------------------------
        EE+EWRKGPWT EEDKLL EYVKVHGEGRW+SVA                                                                  
Subjt:  EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA------------------------------------------------------------------

Query:  ----------------------TDIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQS--YLSMVYEDFATW--------AAAAAAEESY
                              TD KT PPIS  ++R   ++MKP   D+D+LGMVFT+P AM   +   YLS VY+D   W        A  A  EE  
Subjt:  ----------------------TDIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQS--YLSMVYEDFATW--------AAAAAAEESY

Query:  LWGGLWEDSNN
        LW GLWE   N
Subjt:  LWGGLWEDSNN

A0A5A7T8Y5 Transcription factor MYB59-like1.5e-1433.49Show/hide
Query:  EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA------------------------------------------------------------------
        EE+EWRKGPWT EEDKLL EYVKVHGEGRW+SVA                                                                  
Subjt:  EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA------------------------------------------------------------------

Query:  --------------------TDIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQS--YLSMVYEDFATW--------AAAAAAEESYLW
                            TD KT PPIS   +    ++MKP   D+D+LGMVFT+P AM   +   YLS VY+D   W        A  A  EE  LW
Subjt:  --------------------TDIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQS--YLSMVYEDFATW--------AAAAAAEESYLW

Query:  GGLWEDSNN
         GLWE   N
Subjt:  GGLWEDSNN

A0A6J1GRA0 transcription factor MYB59-like3.1e-4956.86Show/hide
Query:  MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVAT--------------------------------------------------------------
        MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVAT                                                              
Subjt:  MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVAT--------------------------------------------------------------

Query:  ------------------------DIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDS
                                D KTSPPISFEQDREEKDMMKPC RDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDS
Subjt:  ------------------------DIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDS

Query:  NNLL
        NNLL
Subjt:  NNLL

A0A6J1JQZ1 transcription factor MYB59-like5.0e-4755.88Show/hide
Query:  MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVAT--------------------------------------------------------------
        MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVAT                                                              
Subjt:  MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVAT--------------------------------------------------------------

Query:  ------------------------DIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDS
                                D KTS PISFEQDREEKDMMK CERDN ELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDS
Subjt:  ------------------------DIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGLWEDS

Query:  NNLL
        NNLL
Subjt:  NNLL

SwissProt top hitse value%identityAlignment
Q10MB4 Transcription factor MYB27.8e-0565.52Show/hide
Query:  RKGPWTPEEDKLLSEYVKVHGEGRWTSVA
        R+GPWT EED LL  Y+  HGEGRW S+A
Subjt:  RKGPWTPEEDKLLSEYVKVHGEGRWTSVA

Q8GYP5 Transcription factor MYB601.3e-0458.06Show/hide
Query:  RKGPWTPEEDKLLSEYVKVHGEGRWTSVATD
        +KGPWTPEED +L  Y++ HG G W SV T+
Subjt:  RKGPWTPEEDKLLSEYVKVHGEGRWTSVATD

Q96276 Transcription factor MYB231.6e-0552.78Show/hide
Query:  DAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA
        D +E E++KG WT EEDK+L +YV+ HG+G W  +A
Subjt:  DAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA

Q9C9G7 Transcription factor MYB626.0e-0555.56Show/hide
Query:  DAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA
        ++E++E R+GPWT EED LL+ Y+  +GEGRW  VA
Subjt:  DAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA

Q9SEI0 Transcription factor WER7.8e-0552.78Show/hide
Query:  DAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA
        D    E++KG WT EEDK+L +YVK HG+G W  +A
Subjt:  DAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA

Arabidopsis top hitse value%identityAlignment
AT1G68320.1 myb domain protein 624.2e-0655.56Show/hide
Query:  DAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA
        ++E++E R+GPWT EED LL+ Y+  +GEGRW  VA
Subjt:  DAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA

AT3G24310.1 myb domain protein 3051.8e-0972.73Show/hide
Query:  EKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA
        E+ WRKGPWT EED+LL +YV++HGEGRW SVA
Subjt:  EKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA

AT3G30210.1 myb domain protein 1211.0e-0767.65Show/hide
Query:  EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA
        +++  RKGPWT EEDKLL+EYV  HGEGRW++VA
Subjt:  EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA

AT4G13480.1 myb domain protein 796.3e-1075.76Show/hide
Query:  EKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA
        E+ WRKGPWT EED+LL EYV+VHGEGRW SV+
Subjt:  EKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA

AT5G40330.1 myb domain protein 231.1e-0652.78Show/hide
Query:  DAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA
        D +E E++KG WT EEDK+L +YV+ HG+G W  +A
Subjt:  DAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCAGAAGAAAAAGAATGGAGGAAGGGACCATGGACTCCCGAGGAAGACAAGTTGTTGTCTGAATACGTGAAAGTGCATGGCGAAGGAAGATGGACTTCTGTTGC
CACTGACATCAAAACATCACCACCAATCAGCTTTGAACAAGACAGAGAGGAGAAAGATATGATGAAGCCATGTGAAAGAGACAATGATGAATTAGGGATGGTTTTTACAG
AGCCTGCAGCCATGGCGGCTGATCAGAGCTACTTGTCAATGGTGTATGAAGATTTTGCAACTTGGGCGGCAGCTGCGGCGGCGGAAGAGAGCTACTTATGGGGTGGCCTT
TGGGAAGATTCAAACAACCTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCAGAAGAAAAAGAATGGAGGAAGGGACCATGGACTCCCGAGGAAGACAAGTTGTTGTCTGAATACGTGAAAGTGCATGGCGAAGGAAGATGGACTTCTGTTGC
CACTGACATCAAAACATCACCACCAATCAGCTTTGAACAAGACAGAGAGGAGAAAGATATGATGAAGCCATGTGAAAGAGACAATGATGAATTAGGGATGGTTTTTACAG
AGCCTGCAGCCATGGCGGCTGATCAGAGCTACTTGTCAATGGTGTATGAAGATTTTGCAACTTGGGCGGCAGCTGCGGCGGCGGAAGAGAGCTACTTATGGGGTGGCCTT
TGGGAAGATTCAAACAACCTTTTGTAA
Protein sequenceShow/hide protein sequence
MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATDIKTSPPISFEQDREEKDMMKPCERDNDELGMVFTEPAAMAADQSYLSMVYEDFATWAAAAAAEESYLWGGL
WEDSNNLL