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Carg05928 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05928
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L10-like
Genome locationCarg_Chr04:21184051..21184936
RNA-Seq ExpressionCarg05928
SyntenyCarg05928
Gene Ontology termsGO:0000027 - ribosomal large subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001197 - Ribosomal protein L10e
IPR036920 - Ribosomal protein L10e/L16 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7033251.1 60S ribosomal protein L10, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-29100Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQAV
        KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQAV
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQAV

XP_004141510.1 60S ribosomal protein L10 [Cucumis sativus]1.7e-2795.31Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQA
        KFKFPGRQKIIVSRKWGFTKFSRA+YLAYKAENKI+PDGVNAKLLGCHGPLANRQPGRAFL QA
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQA

XP_008459481.1 PREDICTED: 60S ribosomal protein L10-like [Cucumis melo]5.9e-2896.83Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQ
        KFKFPGRQKIIVSRKWGFTKFSRA+YLAYKAENKI+PDGVNAKLLGCHGPLANRQPGRAFLPQ
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQ

XP_022960234.1 60S ribosomal protein L10-like [Cucurbita moschata]1.1e-29100Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQAV
        KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQAV
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQAV

XP_038891235.1 60S ribosomal protein L10-like [Benincasa hispida]2.0e-2896.88Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQA
        KFKFPGRQKIIVSRKWGFTKFSRA+YLAYKAENKI+PDGVNAKLLGCHGPLANRQPGRAFLPQA
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQA

TrEMBL top hitse value%identityAlignment
A0A0A0KVY2 Ribosomal_L16 domain-containing protein8.3e-2895.31Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQA
        KFKFPGRQKIIVSRKWGFTKFSRA+YLAYKAENKI+PDGVNAKLLGCHGPLANRQPGRAFL QA
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQA

A0A1S3CAD5 60S ribosomal protein L10-like2.9e-2896.83Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQ
        KFKFPGRQKIIVSRKWGFTKFSRA+YLAYKAENKI+PDGVNAKLLGCHGPLANRQPGRAFLPQ
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQ

A0A6J1CM71 60S ribosomal protein L10-like1.4e-2795.24Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQ
        KFKFPGRQKIIVSRKWGFTKFSRA+YL YKAENKI+PDGVNAKLLGCHGPLANRQPGRAFLPQ
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQ

A0A6J1HAC9 60S ribosomal protein L10-like5.2e-30100Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQAV
        KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQAV
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQAV

A0A6J1JSR2 60S ribosomal protein L10-like5.2e-30100Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQAV
        KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQAV
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQAV

SwissProt top hitse value%identityAlignment
O22431 60S ribosomal protein L101.8e-2475.38Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQAV
        KFKFPGR+KIIV+RKWGFTK++RA+YL +K EN+IVPDGVN KLLGC GPL+NR+PG+AFL  AV
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQAV

P93847 60S ribosomal protein L109.8e-2688.52Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFL
        KFKFPGRQKIIVSRKWGFTKFSR +YL YK+EN+IVPDGVNAKLLG HGPLA RQPGRAFL
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFL

Q40592 60S ribosomal protein L10 (Fragment)3.7e-2586.89Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFL
        KFKFP RQKIIVSRKWGFTKFSR +YL YK+EN+IVPDGVNAKLLGCHG LA RQPGRAFL
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFL

Q93VT9 60S ribosomal protein L10-19.2e-2477.42Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLP
        KFKFPGRQKIIVSRKWGFTKF+RA++   + E ++VPDGVNAK L CHGPLANRQPG AFLP
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLP

Q9SPB3 60S ribosomal protein L106.4e-2578.69Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFL
        KFKFP RQKIIVSRKWGFTKF+R +Y+ +K++N+I+PDGVNAKLLGCHGPLANRQPG+AF+
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFL

Arabidopsis top hitse value%identityAlignment
AT1G14320.1 Ribosomal protein L16p/L10e family protein6.5e-2577.42Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLP
        KFKFPGRQKIIVSRKWGFTKF+RA++   + E ++VPDGVNAK L CHGPLANRQPG AFLP
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLP

AT1G14320.2 Ribosomal protein L16p/L10e family protein6.5e-2577.42Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLP
        KFKFPGRQKIIVSRKWGFTKF+RA++   + E ++VPDGVNAK L CHGPLANRQPG AFLP
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLP

AT1G26910.1 Ribosomal protein L16p/L10e family protein1.1e-2480.33Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFL
        KFKFPGRQKIIVSRKWGFTKF+RA+Y   + E +IVPDGVNAK L CHGPLANRQPG AFL
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFL

AT1G66580.1 senescence associated gene 243.6e-2378.69Show/hide
Query:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFL
        KFKFPGRQKIIVSRKWGFTKF+RAEY   +A  +IVPDGVNAK L  HGPLANRQPG AF+
Subjt:  KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGTTCAAATTCCCTGGTCGTCAGAAGATCATTGTCAGTAGGAAGTGGGGATTCACAAAGTTCAGTCGGGCCGAATATCTGGCTTATAAGGCAGAGAACAAAATTGTGCC
GGACGGTGTCAATGCCAAGCTCCTTGGATGCCATGGACCCTTAGCAAACCGTCAACCTGGAAGAGCTTTTCTACCTCAAGCTGTCTAA
mRNA sequenceShow/hide mRNA sequence
AAGTTCAAATTCCCTGGTCGTCAGAAGATCATTGTCAGTAGGAAGTGGGGATTCACAAAGTTCAGTCGGGCCGAATATCTGGCTTATAAGGCAGAGAACAAAATTGTGCC
GGACGGTGTCAATGCCAAGCTCCTTGGATGCCATGGACCCTTAGCAAACCGTCAACCTGGAAGAGCTTTTCTACCTCAAGCTGTCTAAGCGCAGCTACTTGTTTTGTTTT
TAGGTGTTTTTGTTTTCTTTTTTGACGCTTGGAACAAATCTATATTATCATGTTGTGTGTCTGTATTAACTCGCTAGTCTGGCTGTTATATTGCTTAAAAATGTTGGAGA
TACCAAGGAAAGCCAAAACAACCTTTTCTTTTCCCTCTATTTCTCGTTCTGCTGAACTTTCATAGAAATTATTTTTACCATTCCAATCTTGATGAATCGAAAGTAAGAAA
AATGGTTCCAACG
Protein sequenceShow/hide protein sequence
KFKFPGRQKIIVSRKWGFTKFSRAEYLAYKAENKIVPDGVNAKLLGCHGPLANRQPGRAFLPQAV