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Carg05952 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05952
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein family
Genome locationCarg_Chr04:21274119..21276765
RNA-Seq ExpressionCarg05952
SyntenyCarg05952
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602597.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]1.9e-1793.62Show/hide
Query:  ETENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        ETE+YSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCR++
Subjt:  ETENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

KAG7033275.1 putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-36100Show/hide
Query:  MLWPRRKKVFDRISNADTVLWTAIISETENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYSP
        MLWPRRKKVFDRISNADTVLWTAIISETENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYSP
Subjt:  MLWPRRKKVFDRISNADTVLWTAIISETENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYSP

XP_011656423.1 putative pentatricopeptide repeat-containing protein At3g25970 [Cucumis sativus]2.3e-1541.41Show/hide
Query:  KKVFDRISNADTVLWTAIIS-------------------------------------------------------------ETENYSCVVDLLSRVGHLN
        KKVF+RISNADTV WTAII+                                                             E E+Y+C+VDLLSRVGHLN
Subjt:  KKVFDRISNADTVLWTAIIS-------------------------------------------------------------ETENYSCVVDLLSRVGHLN

Query:  YAMEFVSTMPIEPNEMVWQTLLGTCRIY
         AMEF+S MP+EPNEMVWQTLLG CR++
Subjt:  YAMEFVSTMPIEPNEMVWQTLLGTCRIY

XP_022134356.1 pentatricopeptide repeat-containing protein At2g33680-like [Momordica charantia]8.7e-1542.19Show/hide
Query:  KKVFDRISNADTVLWTAIIS-------------------------------------------------------------ETENYSCVVDLLSRVGHLN
        KKVFDRISNADTV WTAIIS                                                             E E+YSC+VDLLSRVG LN
Subjt:  KKVFDRISNADTVLWTAIIS-------------------------------------------------------------ETENYSCVVDLLSRVGHLN

Query:  YAMEFVSTMPIEPNEMVWQTLLGTCRIY
         A+EF+  MPIEPNEMVWQTLLG CR++
Subjt:  YAMEFVSTMPIEPNEMVWQTLLGTCRIY

XP_038884632.1 pentatricopeptide repeat-containing protein At3g16610-like [Benincasa hispida]3.5e-1642.97Show/hide
Query:  KKVFDRISNADTVLWTAIIS-------------------------------------------------------------ETENYSCVVDLLSRVGHLN
        KKVFDRISNADTV WTAII+                                                             E E+YSC+VD+LSRVGHLN
Subjt:  KKVFDRISNADTVLWTAIIS-------------------------------------------------------------ETENYSCVVDLLSRVGHLN

Query:  YAMEFVSTMPIEPNEMVWQTLLGTCRIY
         AMEF+S MP+EPNEMVWQTLLG CRI+
Subjt:  YAMEFVSTMPIEPNEMVWQTLLGTCRIY

TrEMBL top hitse value%identityAlignment
A0A0A0KBQ4 Uncharacterized protein1.1e-1541.41Show/hide
Query:  KKVFDRISNADTVLWTAIIS-------------------------------------------------------------ETENYSCVVDLLSRVGHLN
        KKVF+RISNADTV WTAII+                                                             E E+Y+C+VDLLSRVGHLN
Subjt:  KKVFDRISNADTVLWTAIIS-------------------------------------------------------------ETENYSCVVDLLSRVGHLN

Query:  YAMEFVSTMPIEPNEMVWQTLLGTCRIY
         AMEF+S MP+EPNEMVWQTLLG CR++
Subjt:  YAMEFVSTMPIEPNEMVWQTLLGTCRIY

A0A151S656 Pentatricopeptide repeat-containing protein At2g13600 family4.6e-1440.62Show/hide
Query:  KKVFDRISNADTVLWTAIIS-------------------------------------------------------------ETENYSCVVDLLSRVGHLN
        KK+F+RISN DTV WTAIIS                                                             E E+Y+CVVDLL RVG LN
Subjt:  KKVFDRISNADTVLWTAIIS-------------------------------------------------------------ETENYSCVVDLLSRVGHLN

Query:  YAMEFVSTMPIEPNEMVWQTLLGTCRIY
         A+EF+S MPIEPNEMVWQTLLG CRI+
Subjt:  YAMEFVSTMPIEPNEMVWQTLLGTCRIY

A0A6A4N5W9 Putative tetratricopeptide-like helical domain-containing protein2.1e-1442.73Show/hide
Query:  KKVFDRISNADTVLWTAIIS-------------------------------------------ETENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVW
        K +F+RISN D V WTAIIS                                           E ++Y+CVVDLL RVGHL+ A+EF+  MPIEPNEM+W
Subjt:  KKVFDRISNADTVLWTAIIS-------------------------------------------ETENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVW

Query:  QTLLGTCRIY
        QTLLG CRI+
Subjt:  QTLLGTCRIY

A0A6J1BXL8 pentatricopeptide repeat-containing protein At2g33680-like4.2e-1542.19Show/hide
Query:  KKVFDRISNADTVLWTAIIS-------------------------------------------------------------ETENYSCVVDLLSRVGHLN
        KKVFDRISNADTV WTAIIS                                                             E E+YSC+VDLLSRVG LN
Subjt:  KKVFDRISNADTVLWTAIIS-------------------------------------------------------------ETENYSCVVDLLSRVGHLN

Query:  YAMEFVSTMPIEPNEMVWQTLLGTCRIY
         A+EF+  MPIEPNEMVWQTLLG CR++
Subjt:  YAMEFVSTMPIEPNEMVWQTLLGTCRIY

A0A6J1FGJ6 pentatricopeptide repeat-containing protein At3g16610-like3.5e-1441.41Show/hide
Query:  KKVFDRISNADTVLWTAIIS------------------------------------------------------ET-------ENYSCVVDLLSRVGHLN
        KKVFD+IS+ADT+ WTAII+                                                      ET       E+YSC+VDLLSRVG LN
Subjt:  KKVFDRISNADTVLWTAIIS------------------------------------------------------ET-------ENYSCVVDLLSRVGHLN

Query:  YAMEFVSTMPIEPNEMVWQTLLGTCRIY
         AMEF+S MPIEPNEMVWQTLLG CR++
Subjt:  YAMEFVSTMPIEPNEMVWQTLLGTCRIY

SwissProt top hitse value%identityAlignment
P0C898 Putative pentatricopeptide repeat-containing protein At3g151305.6e-0955.56Show/hide
Query:  ENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        E+Y+CVVDLL R G L  A   + TMPI+PN  +WQTLL  CR++
Subjt:  ENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

Q9CAY1 Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial6.7e-1057.78Show/hide
Query:  ENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        E+YSC+VDLL R G L+ AMEF+ +MP+EP+  VW  LLG C+I+
Subjt:  ENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

Q9LS72 Pentatricopeptide repeat-containing protein At3g292306.7e-1049.02Show/hide
Query:  IISETENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYS
        ++ + E+Y C+VDLL RVG L  A++ V TMP+EPN ++W  LLG CR+++
Subjt:  IISETENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYS

Q9LXF2 Pentatricopeptide repeat-containing protein At5g153005.6e-0955.56Show/hide
Query:  ENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        ++Y C+VD+L R G L  A  FV +M IEPN +VW+TLLG C+IY
Subjt:  ENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

Q9SUH6 Pentatricopeptide repeat-containing protein At4g307001.5e-0953.33Show/hide
Query:  ENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        ++Y+C+VD+L R GHL  A++F+  M IEP   VW+TLLG CRI+
Subjt:  ENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

Arabidopsis top hitse value%identityAlignment
AT3G11460.1 Pentatricopeptide repeat (PPR) superfamily protein4.7e-1157.78Show/hide
Query:  ENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        E+YSC+VDLL R G L+ AMEF+ +MP+EP+  VW  LLG C+I+
Subjt:  ENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

AT3G15130.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.0e-1055.56Show/hide
Query:  ENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        E+Y+CVVDLL R G L  A   + TMPI+PN  +WQTLL  CR++
Subjt:  ENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

AT3G29230.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.7e-1149.02Show/hide
Query:  IISETENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYS
        ++ + E+Y C+VDLL RVG L  A++ V TMP+EPN ++W  LLG CR+++
Subjt:  IISETENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYS

AT4G30700.1 Pentatricopeptide repeat (PPR) superfamily protein1.1e-1053.33Show/hide
Query:  ENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        ++Y+C+VD+L R GHL  A++F+  M IEP   VW+TLLG CRI+
Subjt:  ENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY

AT5G15300.1 Pentatricopeptide repeat (PPR) superfamily protein4.0e-1055.56Show/hide
Query:  ENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY
        ++Y C+VD+L R G L  A  FV +M IEPN +VW+TLLG C+IY
Subjt:  ENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTGGCCGAGGCGAAAGAAGGTTTTCGATAGAATCTCTAATGCCGATACAGTTTTGTGGACTGCTATAATATCAGAGACGGAGAATTATTCCTGTGTTGTTGATCT
CTTAAGTCGCGTGGGACATCTAAACTATGCAATGGAGTTTGTAAGCACGATGCCCATAGAGCCCAATGAAATGGTTTGGCAGACCTTGTTGGGAACATGTAGGATTTATT
CACCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTGGCCGAGGCGAAAGAAGGTTTTCGATAGAATCTCTAATGCCGATACAGTTTTGTGGACTGCTATAATATCAGAGACGGAGAATTATTCCTGTGTTGTTGATCT
CTTAAGTCGCGTGGGACATCTAAACTATGCAATGGAGTTTGTAAGCACGATGCCCATAGAGCCCAATGAAATGGTTTGGCAGACCTTGTTGGGAACATGTAGGATTTATT
CACCTTAA
Protein sequenceShow/hide protein sequence
MLWPRRKKVFDRISNADTVLWTAIISETENYSCVVDLLSRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYSP