; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg05953 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05953
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCarg_Chr04:21276807..21277230
RNA-Seq ExpressionCarg05953
SyntenyCarg05953
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052031.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]4.7e-3463.64Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIE
        MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLE                   L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIE
Subjt:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIE

Query:  IFSNMRREGFTPNQFSFSSMLVSCASLCLLEY
        IFSNMR EG+ PNQF+FSS+LVSCA+LCLLEY
Subjt:  IFSNMRREGFTPNQFSFSSMLVSCASLCLLEY

KAG7033276.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-65100Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIAESGKKVHAQAIKSGLEWLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVS
        MCQNDIHLDHYTYCSVFNAIAESGKKVHAQAIKSGLEWLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVS
Subjt:  MCQNDIHLDHYTYCSVFNAIAESGKKVHAQAIKSGLEWLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVS

Query:  CASLCLLEYVHKKSMVSPARLAWI
        CASLCLLEYVHKKSMVSPARLAWI
Subjt:  CASLCLLEYVHKKSMVSPARLAWI

TYK04529.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]4.7e-3463.64Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIE
        MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLE                   L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIE
Subjt:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIE

Query:  IFSNMRREGFTPNQFSFSSMLVSCASLCLLEY
        IFSNMR EG+ PNQF+FSS+LVSCA+LCLLEY
Subjt:  IFSNMRREGFTPNQFSFSSMLVSCASLCLLEY

XP_016901974.1 PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Cucumis melo]4.7e-3463.64Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIE
        MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLE                   L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIE
Subjt:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIE

Query:  IFSNMRREGFTPNQFSFSSMLVSCASLCLLEY
        IFSNMR EG+ PNQF+FSS+LVSCA+LCLLEY
Subjt:  IFSNMRREGFTPNQFSFSSMLVSCASLCLLEY

XP_038884632.1 pentatricopeptide repeat-containing protein At3g16610-like [Benincasa hispida]1.5e-3563.64Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRM------------------MVEERDLVPWTTLVTAYSQCFEWDKAIE
        MC NDIHLDHYTYCSVFNAIA      SGKKVHA+AIKSGLE  +  +++   +                   +E+RDLV WTTLVTAYSQC EWDKAIE
Subjt:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRM------------------MVEERDLVPWTTLVTAYSQCFEWDKAIE

Query:  IFSNMRREGFTPNQFSFSSMLVSCASLCLLEY
        IFSNMR EG+ PNQF+FSS+LVSCASLCLLEY
Subjt:  IFSNMRREGFTPNQFSFSSMLVSCASLCLLEY

TrEMBL top hitse value%identityAlignment
A0A0A0KBQ4 Uncharacterized protein3.9e-3463.64Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLE------------------WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIE
        MCQNDI+LDHYTYCSVFNAIA       GKKVHA+AIKSGLE                   L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIE
Subjt:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLE------------------WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIE

Query:  IFSNMRREGFTPNQFSFSSMLVSCASLCLLEY
        IFSNMR EG  PNQF+FSS+LVSCA+LCLLEY
Subjt:  IFSNMRREGFTPNQFSFSSMLVSCASLCLLEY

A0A1S4E171 pentatricopeptide repeat-containing protein At2g27610-like2.3e-3463.64Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIE
        MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLE                   L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIE
Subjt:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIE

Query:  IFSNMRREGFTPNQFSFSSMLVSCASLCLLEY
        IFSNMR EG+ PNQF+FSS+LVSCA+LCLLEY
Subjt:  IFSNMRREGFTPNQFSFSSMLVSCASLCLLEY

A0A5A7UEQ9 Pentatricopeptide repeat-containing protein2.3e-3463.64Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIE
        MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLE                   L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIE
Subjt:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIE

Query:  IFSNMRREGFTPNQFSFSSMLVSCASLCLLEY
        IFSNMR EG+ PNQF+FSS+LVSCA+LCLLEY
Subjt:  IFSNMRREGFTPNQFSFSSMLVSCASLCLLEY

A0A5D3C2B1 Pentatricopeptide repeat-containing protein2.3e-3463.64Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIE
        MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLE                   L  +  V  RM  E+RDL+ WT+LVTAYSQC EWDKAIE
Subjt:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE------------------WLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIE

Query:  IFSNMRREGFTPNQFSFSSMLVSCASLCLLEY
        IFSNMR EG+ PNQF+FSS+LVSCA+LCLLEY
Subjt:  IFSNMRREGFTPNQFSFSSMLVSCASLCLLEY

A0A6J1JX63 pentatricopeptide repeat-containing protein At2g27610-like3.9e-3462.12Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRM------------------MVEERDLVPWTTLVTAYSQCFEWDKAIE
        MC N++HLD YTYCSVFNAIA       GKKVHA+AIKSGLE  +  +++   +                   +EERDLV WTTLVTAYSQC EWDKAIE
Subjt:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRM------------------MVEERDLVPWTTLVTAYSQCFEWDKAIE

Query:  IFSNMRREGFTPNQFSFSSMLVSCASLCLLEY
        IFSNMR EGF PNQF+FSS+LVSCASLCLLEY
Subjt:  IFSNMRREGFTPNQFSFSSMLVSCASLCLLEY

SwissProt top hitse value%identityAlignment
Q9FWA6 Pentatricopeptide repeat-containing protein At3g02330, mitochondrial1.8e-0731.25Show/hide
Query:  MCQNDIHLDHYTYCSVFN-----AIAESGKKVHAQAIKSGLE-------WLMRMLNV-----DRRMMVEE---RDLVPWTTLVTAYSQCFEWDKAIEIFS
        M +  I  D +TY +V +     A A  GK++HAQ IK  L+        L+ M +      D R+M E+   RD V W  ++  Y+   + ++AI++F 
Subjt:  MCQNDIHLDHYTYCSVFN-----AIAESGKKVHAQAIKSGLE-------WLMRMLNV-----DRRMMVEE---RDLVPWTTLVTAYSQCFEWDKAIEIFS

Query:  NMRREGFTPNQFSFSSMLVSCASLCLLE
         M  E   PN  +F S+L +CA + L++
Subjt:  NMRREGFTPNQFSFSSMLVSCASLCLLE

Q9LSL8 Pentatricopeptide repeat-containing protein At5g655701.1e-0632.03Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE--------WLMRM-----------LNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAI
        M  N++  D YT  SVF A ++       ++ H  A+  GLE         L+ M           L +DR   VEE+D+V  T L+  YSQ  E  +A+
Subjt:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLE--------WLMRM-----------LNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAI

Query:  EIFSNMRREGFTPNQFSFSSMLVSCASL
        + F +M  E   PN+++++S+L+SC +L
Subjt:  EIFSNMRREGFTPNQFSFSSMLVSCASL

Q9STS9 Putative pentatricopeptide repeat-containing protein At3g478403.0e-0731.93Show/hide
Query:  DHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRMMVE---------------ERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFT
        D YT+     A A     + GK +H   I  G    + + N    M  E               ERD+V WT+L+ AY +  +  KA+E F  MR     
Subjt:  DHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRMMVE---------------ERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFT

Query:  PNQFSFSSMLVSCASLCLL
        PN+ +F+SM  +CASL  L
Subjt:  PNQFSFSSMLVSCASLCLL

Q9SVA5 Pentatricopeptide repeat-containing protein At4g395306.0e-0827.91Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRMMVE---------------ERDLVPWTTLVTAYSQCFEWDKAIEIFS
        + ++++  D Y   +V +A +     E GK++HA  ++ GLE    ++NV     V+                ++++ WTTL++ Y Q     +A+E+F+
Subjt:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRMMVE---------------ERDLVPWTTLVTAYSQCFEWDKAIEIFS

Query:  NMRREGFTPNQFSFSSMLVSCASLCLLEY
        +M + G  P+ ++ SS+L SCASL  L +
Subjt:  NMRREGFTPNQFSFSSMLVSCASLCLLEY

Q9ZUW3 Pentatricopeptide repeat-containing protein At2g276103.0e-0726.89Show/hide
Query:  MCQNDIHLDHYTYCSVFNAI-AESGKKVHAQAIKSG-----------LEWLMRMLNVDRRMMV----EERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRR
        M +  +  + +TY  +  A+   S  +VHAQ +K+            L+  +++  V+    V    +++D+V W+ ++  Y+Q  E + AI++F  + +
Subjt:  MCQNDIHLDHYTYCSVFNAI-AESGKKVHAQAIKSG-----------LEWLMRMLNVDRRMMV----EERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRR

Query:  EGFTPNQFSFSSMLVSCAS
         G  PN+F+FSS+L  CA+
Subjt:  EGFTPNQFSFSSMLVSCAS

Arabidopsis top hitse value%identityAlignment
AT2G27610.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.1e-0826.89Show/hide
Query:  MCQNDIHLDHYTYCSVFNAI-AESGKKVHAQAIKSG-----------LEWLMRMLNVDRRMMV----EERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRR
        M +  +  + +TY  +  A+   S  +VHAQ +K+            L+  +++  V+    V    +++D+V W+ ++  Y+Q  E + AI++F  + +
Subjt:  MCQNDIHLDHYTYCSVFNAI-AESGKKVHAQAIKSG-----------LEWLMRMLNVDRRMMV----EERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRR

Query:  EGFTPNQFSFSSMLVSCAS
         G  PN+F+FSS+L  CA+
Subjt:  EGFTPNQFSFSSMLVSCAS

AT3G02330.1 Pentatricopeptide repeat (PPR) superfamily protein1.3e-0831.25Show/hide
Query:  MCQNDIHLDHYTYCSVFN-----AIAESGKKVHAQAIKSGLE-------WLMRMLNV-----DRRMMVEE---RDLVPWTTLVTAYSQCFEWDKAIEIFS
        M +  I  D +TY +V +     A A  GK++HAQ IK  L+        L+ M +      D R+M E+   RD V W  ++  Y+   + ++AI++F 
Subjt:  MCQNDIHLDHYTYCSVFN-----AIAESGKKVHAQAIKSGLE-------WLMRMLNV-----DRRMMVEE---RDLVPWTTLVTAYSQCFEWDKAIEIFS

Query:  NMRREGFTPNQFSFSSMLVSCASLCLLE
         M  E   PN  +F S+L +CA + L++
Subjt:  NMRREGFTPNQFSFSSMLVSCASLCLLE

AT3G47840.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.1e-0831.93Show/hide
Query:  DHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRMMVE---------------ERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFT
        D YT+     A A     + GK +H   I  G    + + N    M  E               ERD+V WT+L+ AY +  +  KA+E F  MR     
Subjt:  DHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRMMVE---------------ERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFT

Query:  PNQFSFSSMLVSCASLCLL
        PN+ +F+SM  +CASL  L
Subjt:  PNQFSFSSMLVSCASLCLL

AT3G61170.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.8e-0834.02Show/hide
Query:  GKKVHAQAIKSGLEWLMRMLNVDRRM----------------MVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVSCASL
        G+++H   IK+G +  + ++N    M                M  E++ V WT+++T YSQ     KAIE F ++RREG   NQ++F S+L +CAS+
Subjt:  GKKVHAQAIKSGLEWLMRMLNVDRRM----------------MVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVSCASL

AT4G39530.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.3e-0927.91Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRMMVE---------------ERDLVPWTTLVTAYSQCFEWDKAIEIFS
        + ++++  D Y   +V +A +     E GK++HA  ++ GLE    ++NV     V+                ++++ WTTL++ Y Q     +A+E+F+
Subjt:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEWLMRMLNVDRRMMVE---------------ERDLVPWTTLVTAYSQCFEWDKAIEIFS

Query:  NMRREGFTPNQFSFSSMLVSCASLCLLEY
        +M + G  P+ ++ SS+L SCASL  L +
Subjt:  NMRREGFTPNQFSFSSMLVSCASLCLLEY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTCAAAATGACATACACTTGGACCATTATACTTATTGTAGTGTATTTAATGCCATAGCTGAGTCGGGAAAGAAGGTTCATGCCCAGGCTATAAAATCAGGATTGGA
ATGGCTAATGCGTATGCTAAACGTGGATCGCAGGATGATGGTGGAAGAAAGAGATTTAGTACCTTGGACCACCCTGGTGACTGCTTATTCTCAATGTTTTGAATGGGACA
AAGCAATAGAAATCTTCTCAAATATGAGAAGAGAAGGCTTTACACCCAATCAATTCTCATTTTCTAGCATGCTCGTTTCATGTGCCAGCCTTTGCTTACTCGAGTACGTC
CACAAGAAGTCCATGGTATCCCCTGCAAGGTTGGCTTGGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTCAAAATGACATACACTTGGACCATTATACTTATTGTAGTGTATTTAATGCCATAGCTGAGTCGGGAAAGAAGGTTCATGCCCAGGCTATAAAATCAGGATTGGA
ATGGCTAATGCGTATGCTAAACGTGGATCGCAGGATGATGGTGGAAGAAAGAGATTTAGTACCTTGGACCACCCTGGTGACTGCTTATTCTCAATGTTTTGAATGGGACA
AAGCAATAGAAATCTTCTCAAATATGAGAAGAGAAGGCTTTACACCCAATCAATTCTCATTTTCTAGCATGCTCGTTTCATGTGCCAGCCTTTGCTTACTCGAGTACGTC
CACAAGAAGTCCATGGTATCCCCTGCAAGGTTGGCTTGGATATGA
Protein sequenceShow/hide protein sequence
MCQNDIHLDHYTYCSVFNAIAESGKKVHAQAIKSGLEWLMRMLNVDRRMMVEERDLVPWTTLVTAYSQCFEWDKAIEIFSNMRREGFTPNQFSFSSMLVSCASLCLLEYV
HKKSMVSPARLAWI