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Carg05962 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg05962
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionring canal kelch homolog isoform X1
Genome locationCarg_Chr04:21303657..21305822
RNA-Seq ExpressionCarg05962
SyntenyCarg05962
Gene Ontology termsGO:0034976 - response to endoplasmic reticulum stress (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602604.1 hypothetical protein SDJN03_07837, partial [Cucurbita argyrosperma subsp. sororia]1.3e-4697.94Show/hide
Query:  MREKAIEVSTNGNCCLVSLKQGNGVAKFKTIVLSFSHQFMLRWSINMELSERVVCYKEDRVWGLVNPTALGKRCFFSAVVLLGAILLSRDILNLLWA
        +REKAIEVSTNGNCCLVSLKQGNGVAKFKT+VLSFSHQFMLRWSINMELSERVVCYKEDRVWGLVNPTALGKRCFFSAVVLLGAILLSRDILNLLWA
Subjt:  MREKAIEVSTNGNCCLVSLKQGNGVAKFKTIVLSFSHQFMLRWSINMELSERVVCYKEDRVWGLVNPTALGKRCFFSAVVLLGAILLSRDILNLLWA
KAG7033284.1 hypothetical protein SDJN02_07339 [Cucurbita argyrosperma subsp. argyrosperma]7.3e-58100Show/hide
Query:  MTCWYPSSDIMGSLPAMREKAIEVSTNGNCCLVSLKQGNGVAKFKTIVLSFSHQFMLRWSINMELSERVVCYKEDRVWGLVNPTALGKRCFFSAVVLLGA
        MTCWYPSSDIMGSLPAMREKAIEVSTNGNCCLVSLKQGNGVAKFKTIVLSFSHQFMLRWSINMELSERVVCYKEDRVWGLVNPTALGKRCFFSAVVLLGA
Subjt:  MTCWYPSSDIMGSLPAMREKAIEVSTNGNCCLVSLKQGNGVAKFKTIVLSFSHQFMLRWSINMELSERVVCYKEDRVWGLVNPTALGKRCFFSAVVLLGA

Query:  ILLSRDILNLLWA
        ILLSRDILNLLWA
Subjt:  ILLSRDILNLLWA
XP_008441487.1 PREDICTED: ring canal kelch homolog isoform X1 [Cucumis melo]4.2e-0577.14Show/hide
Query:  MELSERVVCYKEDRVWGLVNPTALGKRCFFSAVVL
        MELSE V CYKEDR W L N TA GKRC+FSAVVL
Subjt:  MELSERVVCYKEDRVWGLVNPTALGKRCFFSAVVL
XP_008441488.1 PREDICTED: uncharacterized protein LOC103485594 isoform X2 [Cucumis melo]4.2e-0577.14Show/hide
Query:  MELSERVVCYKEDRVWGLVNPTALGKRCFFSAVVL
        MELSE V CYKEDR W L N TA GKRC+FSAVVL
Subjt:  MELSERVVCYKEDRVWGLVNPTALGKRCFFSAVVL
TrEMBL top hitse value%identityAlignment
A0A1S3B344 uncharacterized protein LOC103485594 isoform X22.0e-0577.14Show/hide
Query:  MELSERVVCYKEDRVWGLVNPTALGKRCFFSAVVL
        MELSE V CYKEDR W L N TA GKRC+FSAVVL
Subjt:  MELSERVVCYKEDRVWGLVNPTALGKRCFFSAVVL
A0A1S3B4B6 ring canal kelch homolog isoform X12.0e-0577.14Show/hide
Query:  MELSERVVCYKEDRVWGLVNPTALGKRCFFSAVVL
        MELSE V CYKEDR W L N TA GKRC+FSAVVL
Subjt:  MELSERVVCYKEDRVWGLVNPTALGKRCFFSAVVL
A0A5A7UGQ1 Ring canal kelch-like protein isoform X12.0e-0577.14Show/hide
Query:  MELSERVVCYKEDRVWGLVNPTALGKRCFFSAVVL
        MELSE V CYKEDR W L N TA GKRC+FSAVVL
Subjt:  MELSERVVCYKEDRVWGLVNPTALGKRCFFSAVVL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTGCTGGTATCCTTCCAGTGATATTATGGGATCTCTTCCTGCAATGAGAGAAAAGGCTATTGAAGTCTCAACCAATGGGAATTGCTGCTTGGTGTCTCTGAAGCA
AGGAAACGGTGTTGCGAAATTCAAGACTATTGTTCTTAGCTTCTCCCATCAGTTTATGCTTCGGTGGTCTATAAACATGGAACTCTCGGAAAGGGTGGTGTGTTACAAAG
AGGACCGAGTTTGGGGGTTAGTCAACCCCACAGCATTGGGCAAAAGATGCTTTTTCTCTGCCGTCGTTTTGCTTGGAGCTATTCTCCTTTCTAGGGATATTCTTAACTTA
CTCTGGGCGTAG
mRNA sequenceShow/hide mRNA sequence
ACTTATTGCAGCAGGAGCTGGTATGAATCATTTCACGTGACGATGCTTCTTTGTTATTGACATTTGTTAGTGTATTCTCTTTAAATTGGAGTTCTGCTTATGTGTTTACG
CCTCTTTTAAATTTCCATCTTCTTGATTTACTAAATTGTGGCTGAATTGTATTGTAAGACAGGCTGGATCAAAAACTAAAATTCAAAGTTTAAAAAGCTGTTGCAGGATG
TCAGTAAGTGACATAAATACTAATAAGAGCAGCATGGAAGGAAAATAGTTTCAGTCAGCTAAAGAGTGCATGCAAGCCTTGATGAATCTGTATTGATCGTGGGAGGTTTT
GATGGTTCTTCTTTGTTATCAATTATGACTTGCTGGTATCCTTCCAGTGATATTATGGGATCTCTTCCTGCAATGAGAGAAAAGGCTATTGAAGTCTCAACCAATGGGAA
TTGCTGCTTGGTGTCTCTGAAGCAAGGAAACGGTGTTGCGAAATTCAAGACTATTGTTCTTAGCTTCTCCCATCAGTTTATGCTTCGGTGGTCTATAAACATGGAACTCT
CGGAAAGGGTGGTGTGTTACAAAGAGGACCGAGTTTGGGGGTTAGTCAACCCCACAGCATTGGGCAAAAGATGCTTTTTCTCTGCCGTCGTTTTGCTTGGAGCTATTCTC
CTTTCTAGGGATATTCTTAACTTACTCTGGGCGTAGAAAAAAAAAAAAAGAATCTAGTGTCACTATGAGGGGCATGGTTGAAGAGGTTGGAGCACTGGAATGTGAAATCA
AGGT
Protein sequenceShow/hide protein sequence
MTCWYPSSDIMGSLPAMREKAIEVSTNGNCCLVSLKQGNGVAKFKTIVLSFSHQFMLRWSINMELSERVVCYKEDRVWGLVNPTALGKRCFFSAVVLLGAILLSRDILNL
LWA