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Carg06022 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06022
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionE3 ubiquitin-protein ligase SDIR1-like
Genome locationCarg_Chr04:21562968..21566755
RNA-Seq ExpressionCarg06022
SyntenyCarg06022
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0006950 - response to stress (biological process)
GO:0009628 - response to abiotic stimulus (biological process)
GO:0044267 - cellular protein metabolic process (biological process)
GO:1901700 - response to oxygen-containing compound (biological process)
GO:0016020 - membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7033343.1 E3 ubiquitin-protein ligase SDIR1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-122100Show/hide
Query:  PSLEETGHNKQLNTSESPPAIDSLPHLLRRYRRVIILHVSDFSHQGLICDLTVFLVLMGCPAVTSTSDMSFVFRGTRVPDIENGLPGFIPERRAMRVHAA
        PSLEETGHNKQLNTSESPPAIDSLPHLLRRYRRVIILHVSDFSHQGLICDLTVFLVLMGCPAVTSTSDMSFVFRGTRVPDIENGLPGFIPERRAMRVHAA
Subjt:  PSLEETGHNKQLNTSESPPAIDSLPHLLRRYRRVIILHVSDFSHQGLICDLTVFLVLMGCPAVTSTSDMSFVFRGTRVPDIENGLPGFIPERRAMRVHAA

Query:  RPVNSNSLAFLVTVLLLFMILNSHQMSPNFLAQAQARAMAASGLLGHTELRLHMPPSIALATRGHYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSG
        RPVNSNSLAFLVTVLLLFMILNSHQMSPNFLAQAQARAMAASGLLGHTELRLHMPPSIALATRGHYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSG
Subjt:  RPVNSNSLAFLVTVLLLFMILNSHQMSPNFLAQAQARAMAASGLLGHTELRLHMPPSIALATRGHYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSG

Query:  PQRRDKIQPVQLAVPSPYRMNLHAVFA
        PQRRDKIQPVQLAVPSPYRMNLHAVFA
Subjt:  PQRRDKIQPVQLAVPSPYRMNLHAVFA
XP_022955456.1 E3 ubiquitin-protein ligase SDIR1-like isoform X2 [Cucurbita moschata]1.7e-5875.14Show/hide
Query:  MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASGL
        MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL                        AQAQARAMAASGL
Subjt:  MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASGL

Query:  LGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
        LGHTELRLHMPPSIALATRG                    YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
Subjt:  LGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
XP_022991089.1 E3 ubiquitin-protein ligase SDIR1-like [Cucurbita maxima]1.7e-5875.14Show/hide
Query:  MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASGL
        MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL                        AQAQARAMAASGL
Subjt:  MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASGL

Query:  LGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
        LGHTELRLHMPPSIALATRG                    YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
Subjt:  LGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
XP_023540426.1 E3 ubiquitin-protein ligase SDIR1-like isoform X1 [Cucurbita pepo subsp. pepo]1.7e-5875.14Show/hide
Query:  MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASGL
        MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL                        AQAQARAMAASGL
Subjt:  MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASGL

Query:  LGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
        LGHTELRLHMPPSIALATRG                    YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
Subjt:  LGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
XP_023540467.1 E3 ubiquitin-protein ligase SDIR1-like isoform X2 [Cucurbita pepo subsp. pepo]1.7e-5875.14Show/hide
Query:  MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASGL
        MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL                        AQAQARAMAASGL
Subjt:  MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASGL

Query:  LGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
        LGHTELRLHMPPSIALATRG                    YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
Subjt:  LGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
TrEMBL top hitse value%identityAlignment
A0A0A0KBF9 RING-type domain-containing protein7.1e-5858.57Show/hide
Query:  KQLNTSESPPAIDSLPHLLRRYRR--VIILHVS-------------DFSHQGLICDLTVFLVLMGCPAVTSTSDMSFVFRGTRVPDIENGLPGFIPERRA
        +QLN SESPP     P       R    + H S             +FS +   C    + +    P  +    MSFVFRGTRVPDIENGL GFIPERRA
Subjt:  KQLNTSESPPAIDSLPHLLRRYRR--VIILHVS-------------DFSHQGLICDLTVFLVLMGCPAVTSTSDMSFVFRGTRVPDIENGLPGFIPERRA

Query:  MRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASGLLGHTELRLHMPPSIALATRGH-----
        MRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL                        AQAQARAMAASGLLGHTELRLHMPPSIALATRG      
Subjt:  MRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASGLLGHTELRLHMPPSIALATRGH-----

Query:  --------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
                      YETLRALDSDN PTTPSMSEEQINALPVHKYKVSGPQ
Subjt:  --------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
A0A6J1BW51 E3 ubiquitin-protein ligase SDIR17.1e-5874.58Show/hide
Query:  MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASGL
        MSFVFRGTRVPDIENGL GFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL                        AQAQARAMAASGL
Subjt:  MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASGL

Query:  LGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
        LGHTELRLHMPPSIALATRG                    YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
Subjt:  LGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
A0A6J1GTK5 E3 ubiquitin-protein ligase SDIR1-like isoform X18.4e-5975.14Show/hide
Query:  MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASGL
        MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL                        AQAQARAMAASGL
Subjt:  MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASGL

Query:  LGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
        LGHTELRLHMPPSIALATRG                    YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
Subjt:  LGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
A0A6J1GTU0 E3 ubiquitin-protein ligase SDIR1-like isoform X28.4e-5975.14Show/hide
Query:  MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASGL
        MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL                        AQAQARAMAASGL
Subjt:  MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASGL

Query:  LGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
        LGHTELRLHMPPSIALATRG                    YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
Subjt:  LGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
A0A6J1JV67 E3 ubiquitin-protein ligase SDIR1-like8.4e-5975.14Show/hide
Query:  MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASGL
        MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL                        AQAQARAMAASGL
Subjt:  MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASGL

Query:  LGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
        LGHTELRLHMPPSIALATRG                    YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
Subjt:  LGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
SwissProt top hitse value%identityAlignment
Q9M2S6 E3 ubiquitin-protein ligase SDIR11.9e-4462.36Show/hide
Query:  MSFVFRGTRVPDIENGLP-GFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASG
        MSFVFRG+R  D+E+G   GF+PERRAMRVH ARPVNSNSLAFLVTVLLLFMILNSHQM PNFL                        A AQA+A AASG
Subjt:  MSFVFRGTRVPDIENGLP-GFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASG

Query:  LLGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
        L  HTELRLH+PPSIALATRG                    YETLRALDSDNV TT SMSEE+INALPVHKYKV  P+
Subjt:  LLGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
Arabidopsis top hitse value%identityAlignment
AT3G55530.1 RING/U-box superfamily protein1.4e-4562.36Show/hide
Query:  MSFVFRGTRVPDIENGLP-GFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASG
        MSFVFRG+R  D+E+G   GF+PERRAMRVH ARPVNSNSLAFLVTVLLLFMILNSHQM PNFL                        A AQA+A AASG
Subjt:  MSFVFRGTRVPDIENGLP-GFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFL------------------------AQAQARAMAASG

Query:  LLGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ
        L  HTELRLH+PPSIALATRG                    YETLRALDSDNV TT SMSEE+INALPVHKYKV  P+
Subjt:  LLGHTELRLHMPPSIALATRGH-------------------YETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTTCCTTAGAAGAGACGGGTCACAACAAGCAACTCAACACGTCCGAGTCACCTCCCGCCATCGACTCGCTCCCCCATCTTCTCCGTCGCTACCGTCGGGTTATCATTTT
GCACGTCTCGGATTTCTCTCATCAAGGATTAATCTGTGATCTTACAGTCTTTTTGGTGTTAATGGGATGCCCAGCTGTCACATCTACATCGGACATGAGTTTTGTTTTCC
GTGGAACACGAGTTCCAGACATAGAAAATGGTCTCCCTGGATTTATACCTGAGCGGCGTGCAATGCGTGTTCATGCAGCACGTCCTGTTAACTCGAACTCGCTTGCCTTT
CTTGTCACAGTTCTTCTGTTATTCATGATATTGAACTCTCACCAGATGTCACCAAACTTTCTGGCTCAAGCCCAAGCTAGAGCTATGGCAGCTAGTGGTCTTCTGGGTCA
CACTGAATTGAGGTTGCATATGCCACCATCAATAGCACTTGCAACCAGAGGGCACTATGAAACTTTGAGAGCTTTGGATTCTGACAATGTTCCAACAACACCGTCAATGA
GCGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGTTTCTGGTCCTCAAAGAAGAGACAAGATTCAGCCAGTGCAGTTAGCGGTACCAAGTCCTTACAGGATG
AACTTACATGCAGTGTTTGCTTAG
mRNA sequenceShow/hide mRNA sequence
CCTTCCTTAGAAGAGACGGGTCACAACAAGCAACTCAACACGTCCGAGTCACCTCCCGCCATCGACTCGCTCCCCCATCTTCTCCGTCGCTACCGTCGGGTTATCATTTT
GCACGTCTCGGATTTCTCTCATCAAGGATTAATCTGTGATCTTACAGTCTTTTTGGTGTTAATGGGATGCCCAGCTGTCACATCTACATCGGACATGAGTTTTGTTTTCC
GTGGAACACGAGTTCCAGACATAGAAAATGGTCTCCCTGGATTTATACCTGAGCGGCGTGCAATGCGTGTTCATGCAGCACGTCCTGTTAACTCGAACTCGCTTGCCTTT
CTTGTCACAGTTCTTCTGTTATTCATGATATTGAACTCTCACCAGATGTCACCAAACTTTCTGGCTCAAGCCCAAGCTAGAGCTATGGCAGCTAGTGGTCTTCTGGGTCA
CACTGAATTGAGGTTGCATATGCCACCATCAATAGCACTTGCAACCAGAGGGCACTATGAAACTTTGAGAGCTTTGGATTCTGACAATGTTCCAACAACACCGTCAATGA
GCGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGTTTCTGGTCCTCAAAGAAGAGACAAGATTCAGCCAGTGCAGTTAGCGGTACCAAGTCCTTACAGGATG
AACTTACATGCAGTGTTTGCTTAGAGCAAGTAAATGTTGGTGAACTCATACGCAGTTTGCCATGTTTGCATCAGTTCCATGCGAACTGCATAGATCCGTGGCTGGGGCAG
CAGGGAACATGTCCGGTTTGCAAATTCAGAGCGGTGCCCGGGTGGTCGGAGCAGGGGCAAGGGGAAACCGATGCTTATATGGTTTAATTATACGAACCGACGTGGTGTAG
TTAGGTAGTGTCTGAGCTTGTGAGTGAGCAGAATTTTGTTGTTGCATAATCATCCATGTATTATTCCAACCCCTATTAGCAAGTACTTGTTACCTCTACAACTTATTCCA
GGAATTATTATTATTACTTTAACTCAAATTCTTATTACTCTCACTTTATCCCTCCAAAATGA
Protein sequenceShow/hide protein sequence
PSLEETGHNKQLNTSESPPAIDSLPHLLRRYRRVIILHVSDFSHQGLICDLTVFLVLMGCPAVTSTSDMSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAF
LVTVLLLFMILNSHQMSPNFLAQAQARAMAASGLLGHTELRLHMPPSIALATRGHYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQRRDKIQPVQLAVPSPYRM
NLHAVFA