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Carg06109 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06109
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic
Genome locationCarg_Chr04:21957572..21958271
RNA-Seq ExpressionCarg06109
SyntenyCarg06109
Gene Ontology termsNA
InterPro domainsIPR036410 - Heat shock protein DnaJ, cysteine-rich domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7033428.1 hypothetical protein SDJN02_07484 [Cucurbita argyrosperma subsp. argyrosperma]1.8e-64100Show/hide
Query:  MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDC
        MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDC
Subjt:  MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDC

Query:  GKGGLTPEQRGER
        GKGGLTPEQRGER
Subjt:  GKGGLTPEQRGER

XP_022152486.1 uncharacterized protein LOC111020203 [Momordica charantia]8.1e-4174.11Show/hide
Query:  SSVSKSNNSTFPFPF----PPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCG
        S  S + N+ FPFPF    PPH   I P NK + + SNI F AA  FSLPKRCQ CGGKGAIDCPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP+CG
Subjt:  SSVSKSNNSTFPFPF----PPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCG

Query:  KGGLTPEQRGER
         GGLTPEQRGER
Subjt:  KGGLTPEQRGER

XP_022963874.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata]1.5e-6399.12Show/hide
Query:  MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDC
        MAWCGSSVSKSNNST PFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDC
Subjt:  MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDC

Query:  GKGGLTPEQRGER
        GKGGLTPEQRGER
Subjt:  GKGGLTPEQRGER

XP_022990183.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita maxima]2.2e-6298.23Show/hide
Query:  MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDC
        MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNK RSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDC GCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDC
Subjt:  MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDC

Query:  GKGGLTPEQRGER
        GKGGLTPEQRGER
Subjt:  GKGGLTPEQRGER

XP_023521952.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like [Cucurbita pepo subsp. pepo]2.6e-6399.12Show/hide
Query:  MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDC
        MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNK RSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDC
Subjt:  MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDC

Query:  GKGGLTPEQRGER
        GKGGLTPEQRGER
Subjt:  GKGGLTPEQRGER

TrEMBL top hitse value%identityAlignment
A0A0A0LIM5 Uncharacterized protein5.5e-3574.75Show/hide
Query:  FPFPPHGFAILPQNKCRSKPSNI--PFAAAPKFS-LPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER
        FPFP +    + ++K +S P++I  PFAA P  + LPKRCQ CGGKGAIDCPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Subjt:  FPFPPHGFAILPQNKCRSKPSNI--PFAAAPKFS-LPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER

A0A1S3C9W1 protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic1.9e-3567.89Show/hide
Query:  SVSKSNNSTFPFPFPPHGFAILPQNKCRSKPS-NIPFAAAPKFS-LPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGG
        + + ++ S   FPFP +    + ++K +S P+  +PFAA P  + LPKRCQ CGGKGAIDCPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGG
Subjt:  SVSKSNNSTFPFPFPPHGFAILPQNKCRSKPS-NIPFAAAPKFS-LPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGG

Query:  LTPEQRGER
        LTPEQRGER
Subjt:  LTPEQRGER

A0A6J1DHW0 uncharacterized protein LOC1110202033.9e-4174.11Show/hide
Query:  SSVSKSNNSTFPFPF----PPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCG
        S  S + N+ FPFPF    PPH   I P NK + + SNI F AA  FSLPKRCQ CGGKGAIDCPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP+CG
Subjt:  SSVSKSNNSTFPFPF----PPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCG

Query:  KGGLTPEQRGER
         GGLTPEQRGER
Subjt:  KGGLTPEQRGER

A0A6J1HLG5 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic7.4e-6499.12Show/hide
Query:  MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDC
        MAWCGSSVSKSNNST PFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDC
Subjt:  MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDC

Query:  GKGGLTPEQRGER
        GKGGLTPEQRGER
Subjt:  GKGGLTPEQRGER

A0A6J1JSI3 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic1.1e-6298.23Show/hide
Query:  MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDC
        MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNK RSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDC GCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDC
Subjt:  MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDC

Query:  GKGGLTPEQRGER
        GKGGLTPEQRGER
Subjt:  GKGGLTPEQRGER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G22630.1 unknown protein1.6e-3183.08Show/hide
Query:  SLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER
        S+ K C+TCG KGAI+CPGCKGTG+NKKNGN+FERWKCF+CQGFG+KSCP CGKGGLTPEQRGER
Subjt:  SLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTGGTGTGGCAGCTCTGTCTCAAAGAGCAACAACAGCACCTTCCCGTTCCCATTCCCACCCCATGGATTCGCCATACTGCCACAAAATAAATGTAGAAGTAAACC
ATCCAACATCCCCTTCGCTGCAGCGCCAAAATTTTCGCTGCCCAAAAGGTGCCAAACGTGTGGAGGTAAAGGGGCTATCGATTGTCCCGGATGCAAGGGGACTGGGAGAA
ACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAATGTTTCGAGTGCCAAGGATTTGGATTAAAGAGCTGCCCTGACTGTGGAAAAGGAGGACTCACCCCCGAACAAAGG
GGAGAAAGATAA
mRNA sequenceShow/hide mRNA sequence
GGAGAATTGACAACAGTAAAGCCCAAAGAAAGGAAGATGGCGTGGTGTGGCAGCTCTGTCTCAAAGAGCAACAACAGCACCTTCCCGTTCCCATTCCCACCCCATGGATT
CGCCATACTGCCACAAAATAAATGTAGAAGTAAACCATCCAACATCCCCTTCGCTGCAGCGCCAAAATTTTCGCTGCCCAAAAGGTGCCAAACGTGTGGAGGTAAAGGGG
CTATCGATTGTCCCGGATGCAAGGGGACTGGGAGAAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAATGTTTCGAGTGCCAAGGATTTGGATTAAAGAGCTGCCCT
GACTGTGGAAAAGGAGGACTCACCCCCGAACAAAGGGGAGAAAGATAATGCACTCGCACCAGTTTATATTTATCTACTTCAACTTGTCTATTTTCTAATGTGATGCATTT
GCATTGTATCATATATATATATATAT
Protein sequenceShow/hide protein sequence
MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGGKGAIDCPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQR
GER