; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg06156 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06156
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein RDM1-like
Genome locationCarg_Chr06:8772819..8774536
RNA-Seq ExpressionCarg06156
SyntenyCarg06156
Gene Ontology termsGO:0044030 - regulation of DNA methylation (biological process)
GO:0000419 - RNA polymerase V complex (cellular component)
InterPro domainsIPR015270 - Protein RDM1, plant
IPR036319 - RDM1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597432.1 Protein RDM1, partial [Cucurbita argyrosperma subsp. sororia]4.1e-9898.34Show/hide
Query:  QSSFLYKMKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQ
        +SS LYKMKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSID FKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQ
Subjt:  QSSFLYKMKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQ

Query:  LYEQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        LYEQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Subjt:  LYEQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
KAG7028891.1 Protein RDM1 [Cucurbita argyrosperma subsp. argyrosperma]5.5e-103100Show/hide
Query:  MIFFLQSSFLYKMKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLG
        MIFFLQSSFLYKMKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLG
Subjt:  MIFFLQSSFLYKMKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLG

Query:  KSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        KSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Subjt:  KSIKQLYEQPLHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
XP_022951070.1 protein RDM1-like [Cucurbita moschata]3.8e-96100Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH

Query:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
XP_022974457.1 protein RDM1-like [Cucurbita maxima]4.0e-9397.7Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSE MLIKRAEMYQEYMKQIPIPA+RGSVIPF TWMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH

Query:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
XP_023538686.1 protein RDM1-like [Cucurbita pepo subsp. pepo]4.2e-9598.85Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTS+GMLIKRAEMYQEYMKQIPIPAHRGSVIPF TWMGLGKSIKQLYEQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH

Query:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
TrEMBL top hitse value%identityAlignment
A0A6J1E3H6 protein RDM1-like3.2e-8890.23Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSEG+L KRAEMYQEYMKQIPIPAHRGSVIPF TW+GLGKSIKQLY QPL 
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH

Query:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
A0A6J1GHM4 protein RDM1-like1.8e-96100Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH

Query:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
A0A6J1GV10 protein RDM18.3e-8993.1Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
        MKRPMPWNEQVDVISSGESSSSDSE G QNDGFEFKPS+DDFKIPAKEMT+EGMLIKRAEMYQEYMKQI IPA RGSVIPF TWMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH

Query:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        YLTNI LKQWDQLRFGSVDEYKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MHE YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
A0A6J1IGA1 protein RDM1-like1.9e-9397.7Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSE MLIKRAEMYQEYMKQIPIPA+RGSVIPF TWMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH

Query:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
A0A6J1INZ9 protein RDM1-like6.4e-8993.1Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
        MKRPMPWNEQVDVISSGESSSSDSE G QNDGFEFKPS+DDFKIPAKEMT+EGMLIKRAEMYQEYMKQI IPA RGSVIPF TWMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH

Query:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        YLTNI LKQWDQLRFGSVDEYKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MHE YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
SwissProt top hitse value%identityAlignment
Q9LUJ3 Protein RDM14.2e-4554.43Show/hide
Query:  SGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRF
        SG+S SSD +        E            +++  EG L++RAEMYQ+YMKQ+PIP +RGS+IPF +W+GL  S+KQLY QPLHYLTN+ L++WDQ RF
Subjt:  SGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRF

Query:  GSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQ
        G+  E + LD+IIHP+KAEAT+WLVEEIHR T SH H+A LW SD M+  ++D IFP+
Subjt:  GSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQ
Arabidopsis top hitse value%identityAlignment
AT3G22680.1 RNA-DIRECTED DNA METHYLATION 13.0e-4654.43Show/hide
Query:  SGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRF
        SG+S SSD +        E            +++  EG L++RAEMYQ+YMKQ+PIP +RGS+IPF +W+GL  S+KQLY QPLHYLTN+ L++WDQ RF
Subjt:  SGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRF

Query:  GSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQ
        G+  E + LD+IIHP+KAEAT+WLVEEIHR T SH H+A LW SD M+  ++D IFP+
Subjt:  GSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATTTTTTCTCCAGAGTTCCTTTCTTTACAAAATGAAGAGGCCAATGCCGTGGAATGAACAGGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGA
AATAGGAGGACAAAACGATGGATTTGAGTTCAAGCCCTCTATTGACGACTTCAAAATTCCTGCAAAGGAGATGACATCTGAAGGCATGTTGATTAAAAGGGCAGAAATGT
ATCAAGAATACATGAAACAGATCCCGATCCCGGCACACCGTGGATCTGTTATACCGTTTAGAACATGGATGGGACTAGGCAAATCTATAAAGCAACTTTATGAACAGCCT
TTGCATTACCTGACTAACATTCAGCTCAAACAGTGGGATCAATTAAGATTCGGAAGTGTGGATGAATATAAGCCATTGGATACCATAATTCATCCGAGTAAAGCTGAAGC
AACCGTATGGCTGGTTGAAGAGATTCATCGGCGCACCTCGTCACATCATCATGTTGCTAAGCTCTGGTTATCGGACTCGATGCACGAAGTGTATGTTGACTCCATTTTCC
CCCAACTATGA
mRNA sequenceShow/hide mRNA sequence
AAATATTGATGGCTATTGAGGGTAGTAATAATCTGAGGTTGTTCCTTAGCAGAAACTGAGTGCATTGCTTCATAAATTGCATGTGCGAGGTGTTCTTTGGGAATGGAGAT
GTGTGATAGTAAGATAGTGATGGTCCAATGCGGTGATTAGTTCCAATTCTGTGATTGAGTTTTGTTATGAACATGAGAATGAAAGTTTAAAGCTGTTATTTATCAGTAAC
CATGATATTTTTTCTCCAGAGTTCCTTTCTTTACAAAATGAAGAGGCCAATGCCGTGGAATGAACAGGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAG
AAATAGGAGGACAAAACGATGGATTTGAGTTCAAGCCCTCTATTGACGACTTCAAAATTCCTGCAAAGGAGATGACATCTGAAGGCATGTTGATTAAAAGGGCAGAAATG
TATCAAGAATACATGAAACAGATCCCGATCCCGGCACACCGTGGATCTGTTATACCGTTTAGAACATGGATGGGACTAGGCAAATCTATAAAGCAACTTTATGAACAGCC
TTTGCATTACCTGACTAACATTCAGCTCAAACAGTGGGATCAATTAAGATTCGGAAGTGTGGATGAATATAAGCCATTGGATACCATAATTCATCCGAGTAAAGCTGAAG
CAACCGTATGGCTGGTTGAAGAGATTCATCGGCGCACCTCGTCACATCATCATGTTGCTAAGCTCTGGTTATCGGACTCGATGCACGAAGTGTATGTTGACTCCATTTTC
CCCCAACTATGAAAGCTGCTGCTCTCAGTTAAGTTCTGTTCTGTGCTGATATTATAACATATTTCTAGTAGACTACTTGTCATTGACAATGTGAATCGTAATAGAAACAA
CATAGTTCTTTAGTCACACTGCTCTTGAATGTGTAGGTTTCTTATCAACTGACATAGAACATGCTCTACCATTGCTTCTTCTGTCCATTGTTGTGTCTGTCTGTGAAGTA
GTTGATTGCATTTACTTTTGTAGCTTACAGATAGAAAAGCAATCTTAAGTTTCACAGAGATCGAATATAAATCAATAGTGAAGATGCATAGTTTCTTTTACAATTCTTTC
CTATCTGAGAATTATGTTACCAATAATCACCACACGAACAAGACCCATGTCGAAAGAAGTGAAACCGATTATTATCTCGTATTGTTATTTCCCTATCATACACTTTTGAA
ACGTATTTGGCAAATGCATGACAGTCTGAGCACGTTCGGAGATTCTTAATGACACGAATAGGCAGGTGCTTTTTTGTACTTATAAGCCCGTAAGCCATCGCCAGCTTTTC
GCTATGCTGATTGAGTAGATATTGTTTCTCCTGTTCGTTTACATCAAGCAGAACATTGGTTAAATCAGGAACATAGCCAGCATCCCCAAGCCTGTTGGTGATTTCTTTCA
ACATCATGTCAATGAGACAAGTTTCTGGGTGTGATCTGTCGCCTGAGCCTCACATTAGCAACATCAGC
Protein sequenceShow/hide protein sequence
MIFFLQSSFLYKMKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQP
LHYLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL