CuGenDBv2

Gene ID	Carg06199
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Alba domain-containing protein
Genome location	Carg_Chr06:8551691..8552529
RNA-Seq Expression	Carg06199
Synteny	Carg06199
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related IPR036882 - Alba-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6582358.1 hypothetical protein SDJN03_22360, partial [Cucurbita argyrosperma subsp. sororia]

5.2e-48

76.16

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Query:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEIL
        MESGMV+SEAI+EVKN IRNE+EKLL+V PDGEVKEIAVLTE      KKK+NQIQVSNVK+P FYYYNLSKRY     EVELSALGMA PTVV I+EIL
Subjt:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEIL

Query:  KKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTATSE
        KKNGL  +K LTISSVSLKNGEN+RLVMKPKIEI+L+N EK+K I+TAT++
Subjt:  KKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTATSE

KAG6597388.1 hypothetical protein SDJN03_10568, partial [Cucurbita argyrosperma subsp. sororia]

2.3e-56

89.8

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Query:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKPFYYYNLSKRYEVELSALGMATPTVVMISEILKKNGLT
        MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQ               RYEVELSALGMATPTVVMISEILKKNGLT
Subjt:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKPFYYYNLSKRYEVELSALGMATPTVVMISEILKKNGLT

Query:  LEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTATSEDC
        LEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTATSEDC
Subjt:  LEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTATSEDC

KAG7028848.1 hypothetical protein SDJN02_10030, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.0e-68

100

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Query:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKPFYYYNLSKRYEVELSALGMATPTVVMISEILKKNGLT
        MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKPFYYYNLSKRYEVELSALGMATPTVVMISEILKKNGLT
Subjt:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKPFYYYNLSKRYEVELSALGMATPTVVMISEILKKNGLT

Query:  LEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTATSEDC
        LEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTATSEDC
Subjt:  LEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTATSEDC

XP_022147424.1 uncharacterized protein At2g34160-like [Momordica charantia]

2.3e-48

79.22

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Query:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEIL
        MES +V+SEA TEVK+ IRNE+EKLL+V PDG+VKEIAVLTEF     KKKKNQIQVSNVKKP FYYYNLSKRY     EVELSALGMA PTVV I+EIL
Subjt:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEIL

Query:  KKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTA-TSEDC
        KKNGL  EKNLTISSVSLKNGEN+RLVMKPKIEI+LVN EK KNI TA TSEDC
Subjt:  KKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTA-TSEDC

XP_022924600.1 uncharacterized protein At2g34160-like [Cucurbita moschata]

4.0e-48

75.66

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Query:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEIL
        MESGMV+SEAI+E+KN IRNE+EKLL+V PDGEVKEIAVLTE      KKK+NQIQVSNVKKP FYYYNLSKRY     EVELSALGMA PTVV I+EIL
Subjt:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEIL

Query:  KKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTATSED
        KKNGL  +K LTISSVSLKNGEN+RLVMKPKIEI+L+N EK+K I+TAT+ +
Subjt:  KKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTATSED

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AXD3 uncharacterized protein At2g34160-like

2.4e-46

75.16

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Query:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEIL
        M+SG V+SEA  EVKN I+NE+EKLL+  PD EVKEIAVLTEF     KKK+NQIQVSNVKKP FYYYNLSKR+     EVELSALGMA PTVV I+EIL
Subjt:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEIL

Query:  KKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTA-TSED
        K+NGL  +KNLTISSVSLKNGEN +LVMKPKIEI+LVN EKIKNI+TA TSED
Subjt:  KKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTA-TSED

A0A5D3CZ81 Alba DNA/RNA-binding protein

2.4e-46

75.16

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Query:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEIL
        M+SG V+SEA  EVKN I+NE+EKLL+  PD EVKEIAVLTEF     KKK+NQIQVSNVKKP FYYYNLSKR+     EVELSALGMA PTVV I+EIL
Subjt:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEIL

Query:  KKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTA-TSED
        K+NGL  +KNLTISSVSLKNGEN +LVMKPKIEI+LVN EKIKNI+TA TSED
Subjt:  KKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTA-TSED

A0A6J1D0Y9 uncharacterized protein At2g34160-like

1.1e-48

79.22

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Query:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEIL
        MES +V+SEA TEVK+ IRNE+EKLL+V PDG+VKEIAVLTEF     KKKKNQIQVSNVKKP FYYYNLSKRY     EVELSALGMA PTVV I+EIL
Subjt:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEIL

Query:  KKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTA-TSEDC
        KKNGL  EKNLTISSVSLKNGEN+RLVMKPKIEI+LVN EK KNI TA TSEDC
Subjt:  KKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTA-TSEDC

A0A6J1EFH1 uncharacterized protein At2g34160-like

1.9e-48

75.66

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Query:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEIL
        MESGMV+SEAI+E+KN IRNE+EKLL+V PDGEVKEIAVLTE      KKK+NQIQVSNVKKP FYYYNLSKRY     EVELSALGMA PTVV I+EIL
Subjt:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEIL

Query:  KKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTATSED
        KKNGL  +K LTISSVSLKNGEN+RLVMKPKIEI+L+N EK+K I+TAT+ +
Subjt:  KKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTATSED

A0A6J1IXN8 uncharacterized protein At2g34160-like

3.7e-47

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Query:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEIL
        MESGMV+SEA +EVKN IRNE+EKLL+V PD EVKEIAVLTE      KKK+NQIQVSNVKKP FYYYNLSKRY     EVELSALGMA PTVV I+EIL
Subjt:  MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEIL

Query:  KKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTATSED
        KKNGL  +K LTISSVSLKNGEN+RLVMKPKIEI+L+N EK+K I+TAT+ +
Subjt:  KKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTATSED

SwissProt top hits

e value

%identity

Alignment

O22969 Uncharacterized protein At2g34160

1.7e-17

52.43

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Query:  KKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTAT
        +KKN+IQVSN KKP F+Y NL+KRY     +VELSALGMA  TVV ++EILK NG  +EK +  S+V +K+    R V K KIEI+LV +EK   +  A 
Subjt:  KKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTAT

Query:  SED
        +E+
Subjt:  SED

Arabidopsis top hits

e value

%identity

Alignment

AT1G29250.1 Alba DNA/RNA-binding protein

2.7e-18

51.46

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Query:  KKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTAT
        +KKN+IQVSN KKP F+Y NL+KRY     +VELSALGMA  TVV ++EILK NG  +EK +  S+V +K+    R V K KIEI+L  +EK   +  A 
Subjt:  KKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTAT

Query:  SED
        +E+
Subjt:  SED

AT2G34160.1 Alba DNA/RNA-binding protein

1.2e-18

52.43

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Query:  KKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTAT
        +KKN+IQVSN KKP F+Y NL+KRY     +VELSALGMA  TVV ++EILK NG  +EK +  S+V +K+    R V K KIEI+LV +EK   +  A 
Subjt:  KKKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNITTAT

Query:  SED
        +E+
Subjt:  SED

AT3G04620.1 Alba DNA/RNA-binding protein

3.0e-17

55.79

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Query:  KKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNI
        KKN+IQVSN KKP F+Y NL+KRY     EVELSALGMA  TVV ISEILK NGL  EK +  S+V +K+    ++V K KIEI L  ++K  ++
Subjt:  KKNQIQVSNVKKP-FYYYNLSKRY-----EVELSALGMATPTVVMISEILKKNGLTLEKNLTISSVSLKNGENERLVMKPKIEISLVNTEKIKNI

Sequences

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CDS sequence

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ATGGAGTCCGGCATGGTCATCTCAGAAGCTATTACTGAGGTTAAGAATGCAATCCGTAATGAGGACGAAAAGCTCCTCATCGTTGTCCCCGATGGTGAGGTTAAGGAGAT
TGCTGTATTGACCGAGTTTAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCAAATTCAGGTTTCCAATGTCAAGAAGCCGTTCTACTACTACAATCTTTCTAAGAGGTACG
AAGTTGAGCTCTCAGCCTTGGGAATGGCTACACCAACTGTAGTGATGATTTCTGAGATTCTGAAGAAGAATGGATTGACATTGGAAAAGAACTTGACGATATCTTCTGTC
AGTTTGAAGAACGGGGAAAACGAAAGGCTGGTAATGAAACCTAAGATTGAGATTTCACTGGTAAATACAGAGAAGATCAAAAACATTACAACTGCTACAAGTGAAGATTG
TTGA

mRNA sequence

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Protein sequence

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MESGMVISEAITEVKNAIRNEDEKLLIVVPDGEVKEIAVLTEFKKKKKKKKKNQIQVSNVKKPFYYYNLSKRYEVELSALGMATPTVVMISEILKKNGLTLEKNLTISSV
SLKNGENERLVMKPKIEISLVNTEKIKNITTATSEDC

Carg06199 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome