CuGenDBv2

Gene ID	Carg06223
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein L2, chloroplastic
Genome location	Carg_Chr06:8438022..8438404
RNA-Seq Expression	Carg06223
Synteny	Carg06223
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0015934 - large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002171 - Ribosomal protein L2 IPR008991 - Translation protein SH3-like domain superfamily IPR014722 - Ribosomal protein L2, domain 2 IPR022669 - Ribosomal protein L2, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

CAB4075271.1 unnamed protein product [Lactuca saligna]

1.1e-29

63.28

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Query:  TPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDHPR
        T + +  AIHNIEITLGKGGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVGN G                        VMNPVDHP 
Subjt:  TPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDHPR

Query:  EVVKGGPQLVDKNLQHLEVILHLKEEVE
         VVKGGPQLV+ N Q L VILHL++EVE
Subjt:  EVVKGGPQLVDKNLQHLEVILHLKEEVE

KAG7028824.1 50S ribosomal protein L2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.9e-51

100

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Query:  PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAGVMNPVDHPREVVKGGPQLVDKNLQHLEVILH
        PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAGVMNPVDHPREVVKGGPQLVDKNLQHLEVILH
Subjt:  PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAGVMNPVDHPREVVKGGPQLVDKNLQHLEVILH

Query:  LKEEVEDEN
        LKEEVEDEN
Subjt:  LKEEVEDEN

QHO28475.1 50S ribosomal protein [Arachis hypogaea]

3.6e-30

66.13

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Query:  IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDHPREVVK
        +  AIHNIEITLGKGGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVGN G                        VMNPVDHP  VVK
Subjt:  IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDHPREVVK

Query:  GGPQLVDKNLQHLEVILHLKEEVE
        GGPQLV+KN Q L VILHL+EEVE
Subjt:  GGPQLVDKNLQHLEVILHLKEEVE

RYR40787.1 hypothetical protein Ahy_A09g046524 [Arachis hypogaea]

1.4e-29

65.32

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Query:  IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDHPREVVK
        +  AIHNIEITLG GGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVGN G                        VMNPVDHP  VVK
Subjt:  IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDHPREVVK

Query:  GGPQLVDKNLQHLEVILHLKEEVE
        GGPQLV+KN Q L VILHL+EEVE
Subjt:  GGPQLVDKNLQHLEVILHLKEEVE

RYR40790.1 hypothetical protein Ahy_A09g046527 [Arachis hypogaea]

3.6e-30

66.13

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Query:  IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDHPREVVK
        +  AIHNIEITLGKGGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVGN G                        VMNPVDHP  VVK
Subjt:  IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDHPREVVK

Query:  GGPQLVDKNLQHLEVILHLKEEVE
        GGPQLV+KN Q L VILHL+EEVE
Subjt:  GGPQLVDKNLQHLEVILHLKEEVE

TrEMBL top hits

e value

%identity

Alignment

A0A251TPZ5 Putative ribosomal protein L2, Ribosomal protein S19/S15, Ribosomal protein S19, superfamily

3.9e-30

65.32

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Query:  IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDHPREVVK
        +  AIHNIEITLGKGGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVGN G                        VMNPVDHP  VVK
Subjt:  IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDHPREVVK

Query:  GGPQLVDKNLQHLEVILHLKEEVE
        GGPQLV+KN Q L VILHL++EVE
Subjt:  GGPQLVDKNLQHLEVILHLKEEVE

A0A445BQ34 30S ribosomal protein S3, chloroplastic

6.7e-30

65.32

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Query:  IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDHPREVVK
        +  AIHNIEITLG GGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVGN G                        VMNPVDHP  VVK
Subjt:  IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDHPREVVK

Query:  GGPQLVDKNLQHLEVILHLKEEVE
        GGPQLV+KN Q L VILHL+EEVE
Subjt:  GGPQLVDKNLQHLEVILHLKEEVE

A0A445BQ35 50S ribosomal protein L23, chloroplastic

1.8e-30

66.13

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Query:  IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDHPREVVK
        +  AIHNIEITLGKGGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVGN G                        VMNPVDHP  VVK
Subjt:  IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDHPREVVK

Query:  GGPQLVDKNLQHLEVILHLKEEVE
        GGPQLV+KN Q L VILHL+EEVE
Subjt:  GGPQLVDKNLQHLEVILHLKEEVE

A0A6B9V7U6 50S ribosomal protein

1.5e-29

65.57

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Query:  IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDHPREVVK
        +  AIHNIEITLGKGGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVGN G                        VMNPVDHP  VVK
Subjt:  IDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDHPREVVK

Query:  GGPQLVDKNLQHLEVILHLKEE
        GGPQLV+KN Q L VILHL+EE
Subjt:  GGPQLVDKNLQHLEVILHLKEE

A0A6S7KY61 Ribosomal_L2_C domain-containing protein

5.1e-30

63.28

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Query:  TPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDHPR
        T + +  AIHNIEITLGKGGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVGN G                        VMNPVDHP 
Subjt:  TPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDHPR

Query:  EVVKGGPQLVDKNLQHLEVILHLKEEVE
         VVKGGPQLV+ N Q L VILHL++EVE
Subjt:  EVVKGGPQLVDKNLQHLEVILHLKEEVE

SwissProt top hits

e value

%identity

Alignment

A4GYV2 50S ribosomal protein L2, chloroplastic

1.0e-22

61.39

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Query:  PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDH
        P T + +  AIHNIEITLG+GGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVGNAG                        VMNPVDH
Subjt:  PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDH

Query:  P
        P
Subjt:  P

P21434 50S ribosomal protein L2, chloroplastic

2.4e-32

63.08

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Query:  PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDH
        P T + +  AIHNIEITLGKGGQLARA  AVA+LIAKE KSATLKLPSGE R ISKNCSAT+ QVGN G                        VMNPVDH
Subjt:  PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDH

Query:  PREVVKGGPQLVDKNLQHLEVILHLKEEVE
        P  VVKG PQLV+KN Q L VILHL+EEVE
Subjt:  PREVVKGGPQLVDKNLQHLEVILHLKEEVE

Q14FB6 50S ribosomal protein L2-B, chloroplastic

1.0e-22

61.39

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Query:  PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDH
        P T + +  AIHNIEITLG+GGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVGNAG                        VMNPVDH
Subjt:  PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDH

Query:  P
        P
Subjt:  P

Q4VZK5 50S ribosomal protein L2, chloroplastic

4.5e-23

62.38

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Query:  PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDH
        P T + +  AIHNIEITLGKGGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVGNAG                        VMNPVDH
Subjt:  PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDH

Query:  P
        P
Subjt:  P

Q589A7 50S ribosomal protein L2, chloroplastic

5.9e-23

56.52

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Query:  PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDH
        P T + +  AIHNIEITLGKGGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVGN G                        VMNPVDH
Subjt:  PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDH

Query:  PREVVKGGPQLVDKN
        P    +G   +  KN
Subjt:  PREVVKGGPQLVDKN

Arabidopsis top hits

e value

%identity

Alignment

AT3G51190.1 Ribosomal protein L2 family

6.2e-04

41.27

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Query:  AAIHNIEITLGKGGQLARATSAVAELIAKEEKSAT--LKLPSGEARLISKNCSATIQQVGNAG
        A I N+E+ +G  G LARA+   A +IA   +S T  +KLPSG  +++   C A I QV   G
Subjt:  AAIHNIEITLGKGGQLARATSAVAELIAKEEKSAT--LKLPSGEARLISKNCSATIQQVGNAG

ATCG00830.1 ribosomal protein L2

2.1e-23

60.4

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Query:  PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDH
        P T + +  AIHNIEITLG+GGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVGN G                        VMNPVDH
Subjt:  PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDH

Query:  P
        P
Subjt:  P

ATCG01310.1 ribosomal protein L2

2.1e-23

60.4

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Query:  PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDH
        P T + +  AIHNIEITLG+GGQLARA  AVA+LIAKE KSATLKLPSGE RLISKNCSAT+ QVGN G                        VMNPVDH
Subjt:  PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAG------------------------VMNPVDH

Query:  P
        P
Subjt:  P

Sequences

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CDS sequence

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CCTGAAACTCCTATTAACATAGACGCGGCCATACATAATATAGAAATCACACTTGGGAAGGGAGGACAATTAGCTAGAGCAACAAGTGCTGTAGCGGAACTGATTGCAAA
AGAGGAGAAATCAGCTACATTAAAATTACCTTCTGGGGAGGCCCGTTTGATATCCAAAAATTGCTCAGCAACAATCCAACAAGTGGGGAATGCAGGGGTTATGAACCCTG
TAGACCATCCCCGTGAGGTGGTGAAGGGAGGGCCCCAATTGGTAGATAAAAACCTGCAACACCTTGAGGTTATCCTGCACTTGAAAGAAGAGGTAGAAGACGAAAAT

mRNA sequence

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Protein sequence

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PETPINIDAAIHNIEITLGKGGQLARATSAVAELIAKEEKSATLKLPSGEARLISKNCSATIQQVGNAGVMNPVDHPREVVKGGPQLVDKNLQHLEVILHLKEEVEDEN

Carg06223 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome