; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg06339 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06339
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L18-like
Genome locationCarg_Chr06:7751245..7752454
RNA-Seq ExpressionCarg06339
SyntenyCarg06339
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18
IPR036967 - Ribosomal protein S11 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028712.1 rplR, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-78100Show/hide
Query:  MAFGIVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNA
        MAFGIVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNA
Subjt:  MAFGIVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNA

Query:  CRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV
        CRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV
Subjt:  CRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV

XP_022937699.1 uncharacterized protein LOC111444022 [Cucurbita moschata]5.1e-6789.93Show/hide
Query:  MAFGIVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNA
        ++  I  P  ST      NSIIQAAWTRRS+GETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNA
Subjt:  MAFGIVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNA

Query:  CRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV
        CRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV
Subjt:  CRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV

XP_022974777.1 uncharacterized protein LOC111473501 [Cucurbita maxima]1.1e-7798.66Show/hide
Query:  MAFGIVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNA
        MAFGI+QPRCSTECLVETNSIIQAAWTRRS+GETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNA
Subjt:  MAFGIVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNA

Query:  CRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV
        CRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV
Subjt:  CRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV

XP_022974979.1 uncharacterized protein LOC111473828 [Cucurbita maxima]8.7e-6799.24Show/hide
Query:  NSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVF
        NSIIQAAWTRRS+GETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVF
Subjt:  NSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVF

Query:  VISYDPPKSAKIEGKIEIVIDAIKDNGILFV
        VISYDPPKSAKIEGKIEIVIDAIKDNGILFV
Subjt:  VISYDPPKSAKIEGKIEIVIDAIKDNGILFV

XP_023540956.1 uncharacterized protein LOC111801186 [Cucurbita pepo subsp. pepo]5.1e-6789.93Show/hide
Query:  MAFGIVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNA
        ++  I  P  ST      NSIIQAAWTRRS+GETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNA
Subjt:  MAFGIVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNA

Query:  CRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV
        CRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV
Subjt:  CRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV

TrEMBL top hitse value%identityAlignment
A0A1S3AVM4 50S ribosomal protein L18-like4.4e-5678.08Show/hide
Query:  IVQPRCSTECLVETNSIIQ-AAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRI
        I  P  ST     T S+I+ AAWTRRS+GE +KR N+KSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSP+DDNACRI
Subjt:  IVQPRCSTECLVETNSIIQ-AAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRI

Query:  IGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV
        IGNLIAERCKEADVF +SYDPP   +I+ K+ IVID IK+NGI+FV
Subjt:  IGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV

A0A6J1CZ23 uncharacterized protein LOC1110160812.9e-6082.76Show/hide
Query:  IVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRII
        I  P  ST    + NS I+AAWTRRS+GE +KRPNRKSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHR TSKVVSAASTN KDLRYSLPSPTDDNACRII
Subjt:  IVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRII

Query:  GNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV
        GN+IAERCKEADVFV+SY+PPKS +IEGKIEIVID IK+NGILFV
Subjt:  GNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV

A0A6J1FBY3 uncharacterized protein LOC1114440222.5e-6789.93Show/hide
Query:  MAFGIVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNA
        ++  I  P  ST      NSIIQAAWTRRS+GETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNA
Subjt:  MAFGIVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNA

Query:  CRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV
        CRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV
Subjt:  CRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV

A0A6J1IB72 uncharacterized protein LOC1114735015.3e-7898.66Show/hide
Query:  MAFGIVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNA
        MAFGI+QPRCSTECLVETNSIIQAAWTRRS+GETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNA
Subjt:  MAFGIVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNA

Query:  CRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV
        CRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV
Subjt:  CRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV

A0A6J1IJ40 uncharacterized protein LOC1114738284.2e-6799.24Show/hide
Query:  NSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVF
        NSIIQAAWTRRS+GETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVF
Subjt:  NSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVF

Query:  VISYDPPKSAKIEGKIEIVIDAIKDNGILFV
        VISYDPPKSAKIEGKIEIVIDAIKDNGILFV
Subjt:  VISYDPPKSAKIEGKIEIVIDAIKDNGILFV

SwissProt top hitse value%identityAlignment
A9BG02 50S ribosomal protein L181.4e-0628.1Show/hide
Query:  KRPNRKSWKQRTDMYMRPFV--------LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKS
        K+ ++K+ +Q+  + +R  V        L V+ S++ I+A+++       +++AST  K L+  L    D+NA + +G LIAE+ KE  +  I +D    
Subjt:  KRPNRKSWKQRTDMYMRPFV--------LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKS

Query:  AKIEGKIEIVIDAIKDNGILF
         K  GK++ + +A ++ G+ F
Subjt:  AKIEGKIEIVIDAIKDNGILF

B5ZYV1 50S ribosomal protein L181.4e-0634.45Show/hide
Query:  KGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKI
        K   ++R NR     ++    RP  L V+ S + I+A+V+     K ++AAST  KDLR SL +  D  A  ++G L+AER  +A V  + +D  + A I
Subjt:  KGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKI

Query:  -EGKIEIVIDAIKDNGILF
          G+I+ + DA ++ G+ F
Subjt:  -EGKIEIVIDAIKDNGILF

Q11HR8 50S ribosomal protein L182.3e-0631.93Show/hide
Query:  SKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAK
        SK   ++R  R   K +     RP  L VY S + I+A+V+       ++AAS+  KDLR  L +  D +A  ++G LIAER K+A +  + +D      
Subjt:  SKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAK

Query:  IEGKIEIVIDAIKDNGILF
          G+++ + DA ++ G+ F
Subjt:  IEGKIEIVIDAIKDNGILF

Q14JA4 50S ribosomal protein L183.1e-0629.31Show/hide
Query:  KRPNRKSWKQRTDMYMRPF---VLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEG
        K+  R S  +RT + +R      L VY + R ++A+V+    S V+ AAST  KD++       +  +  I+G +IA+RCKE  +  +++D     K  G
Subjt:  KRPNRKSWKQRTDMYMRPF---VLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEG

Query:  KIEIVIDAIKDNGILF
        +++ +++A +++G+ F
Subjt:  KIEIVIDAIKDNGILF

Q5P316 50S ribosomal protein L188.0e-0732.26Show/hide
Query:  LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILF
        L V+ +   I+A+V+    S+V++AAST   D+R  LP+  +  A +++G LIAER K A V  +++D     +  G+++ + +A ++ G+ F
Subjt:  LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILF

Arabidopsis top hitse value%identityAlignment
AT1G08845.1 Ribosomal L18p/L5e family protein1.7e-2347.86Show/hide
Query:  KGETSKRPNRK-SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAK
        K + SK P++  S+KQRT  YM PF LDV+ S+RF+ A + HR T + V+ A TN KD++  L S  D  AC  IG +++ER KEADV+  SY P    K
Subjt:  KGETSKRPNRK-SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAK

Query:  IEGKIEIVIDAIKDNGI
         EGKI  V+ ++ DNGI
Subjt:  IEGKIEIVIDAIKDNGI

AT1G08845.2 Ribosomal L18p/L5e family protein1.7e-2347.86Show/hide
Query:  KGETSKRPNRK-SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAK
        K + SK P++  S+KQRT  YM PF LDV+ S+RF+ A + HR T + V+ A TN KD++  L S  D  AC  IG +++ER KEADV+  SY P    K
Subjt:  KGETSKRPNRK-SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAK

Query:  IEGKIEIVIDAIKDNGI
         EGKI  V+ ++ DNGI
Subjt:  IEGKIEIVIDAIKDNGI

AT3G20230.1 Ribosomal L18p/L5e family protein3.5e-5066.67Show/hide
Query:  LVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKE
        +V+ +S +QAAWTRRS+GE +KRPNRKSWKQRTDMYMRPF+L+V+FSR+FIHAKVMHR TSKV+S A+TN +D+R ++PS  D+ ACR+IG LIAER  E
Subjt:  LVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKE

Query:  ADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV
        ADV+ +SY+P K  +IEGK+ IVID IK++GI+FV
Subjt:  ADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV

AT3G22450.1 Ribosomal L18p/L5e family protein7.9e-1839.64Show/hide
Query:  KRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIE
        KR    ++ Q T  +  PF LD+Y S+  + A V+HR TSKVV+ A +  KD+++ L S  +  AC  +G ++A+R  E D+  + Y P K  KIEGK++
Subjt:  KRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIE

Query:  IVIDAIKDNGI
        +V+ A+ DNG+
Subjt:  IVIDAIKDNGI

AT5G27820.1 Ribosomal L18p/L5e family protein5.0e-1231.96Show/hide
Query:  YMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGI
        Y++P+VL ++F+ +F+HA+V+H  T+ V  +AS+  K LR ++    D  A   IG ++ ER    D+  ++    K  +  GK++ VID++++ G+
Subjt:  YMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTTTGGGATCGTGCAGCCAAGGTGTTCGACGGAATGTCTAGTCGAAACTAATTCTATCATTCAAGCAGCCTGGACACGAAGATCTAAAGGAGAAACTTCAAAAAG
ACCGAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTATACTTTTCAAGGAGGTTCATACATGCCAAAGTGATGCATCGAGGAA
CAAGCAAAGTGGTGTCGGCAGCAAGCACCAATTGCAAGGATTTAAGGTATTCATTGCCATCGCCCACTGATGACAATGCGTGTCGGATTATTGGGAACCTAATTGCTGAG
AGATGTAAAGAAGCTGATGTATTTGTAATCTCTTACGACCCTCCAAAGAGTGCAAAAATTGAAGGCAAAATTGAGATTGTCATTGATGCCATTAAGGACAATGGTATCTT
ATTCGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTTTGGGATCGTGCAGCCAAGGTGTTCGACGGAATGTCTAGTCGAAACTAATTCTATCATTCAAGCAGCCTGGACACGAAGATCTAAAGGAGAAACTTCAAAAAG
ACCGAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTGGATGTATACTTTTCAAGGAGGTTCATACATGCCAAAGTGATGCATCGAGGAA
CAAGCAAAGTGGTGTCGGCAGCAAGCACCAATTGCAAGGATTTAAGGTATTCATTGCCATCGCCCACTGATGACAATGCGTGTCGGATTATTGGGAACCTAATTGCTGAG
AGATGTAAAGAAGCTGATGTATTTGTAATCTCTTACGACCCTCCAAAGAGTGCAAAAATTGAAGGCAAAATTGAGATTGTCATTGATGCCATTAAGGACAATGGTATCTT
ATTCGTTTAA
Protein sequenceShow/hide protein sequence
MAFGIVQPRCSTECLVETNSIIQAAWTRRSKGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAE
RCKEADVFVISYDPPKSAKIEGKIEIVIDAIKDNGILFV