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Carg06352 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06352
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionlate embryogenesis abundant protein 6-like
Genome locationCarg_Chr06:7649528..7650512
RNA-Seq ExpressionCarg06352
SyntenyCarg06352
Gene Ontology termsGO:0009793 - embryo development ending in seed dormancy (biological process)
InterPro domainsIPR005513 - Late embryogenesis abundant protein, LEA_1 subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597226.1 Late embryogenesis abundant protein 6, partial [Cucurbita argyrosperma subsp. sororia]1.8e-4899.12Show/hide
Query:  MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPSAAANISMASGMALDGTPCT
        MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYA NPPTSFVPSAAANISMASGMALDGTPCT
Subjt:  MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPSAAANISMASGMALDGTPCT

Query:  IYMAGTPASKKLL
        IYMAGTPASKKLL
Subjt:  IYMAGTPASKKLL

KAG7028698.1 Late embryogenesis abundant protein 6 [Cucurbita argyrosperma subsp. argyrosperma]4.7e-49100Show/hide
Query:  MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPSAAANISMASGMALDGTPCT
        MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPSAAANISMASGMALDGTPCT
Subjt:  MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPSAAANISMASGMALDGTPCT

Query:  IYMAGTPASKKLL
        IYMAGTPASKKLL
Subjt:  IYMAGTPASKKLL

XP_008438228.1 PREDICTED: uncharacterized protein LOC103483397 [Cucumis melo]1.0e-2767.48Show/hide
Query:  MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFV--------PSAAANISMASGM
        MQAVKEKLHDMSV+RKAKAEAKAEEK EKELAKARVEVAHEVRLA+EAEA MDLHVA+AGM AE EMA YA     +FV        P  +AN+ +A GM
Subjt:  MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFV--------PSAAANISMASGM

Query:  ALDGTPCTIYMAG--TPASKKLL
         + G P T+ MAG  +PA+KKLL
Subjt:  ALDGTPCTIYMAG--TPASKKLL

XP_022974150.1 late embryogenesis abundant protein 6-like [Cucurbita maxima]2.4e-4092.66Show/hide
Query:  MSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPS------AAANISMASGMALDGTPCTIYMA
        MSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMA YA NPPTSFVPS      AAANISMASGMALDGTPCTIYMA
Subjt:  MSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPS------AAANISMASGMALDGTPCTIYMA

Query:  GTPASKKLL
        GTPASKKLL
Subjt:  GTPASKKLL

XP_023538811.1 late embryogenesis abundant protein 6-like [Cucurbita pepo subsp. pepo]5.3e-4090.83Show/hide
Query:  MSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPS------AAANISMASGMALDGTPCTIYMA
        MSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYA NPPTSFVPS      AAANISMASG+ +DGTPCTIYMA
Subjt:  MSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPS------AAANISMASGMALDGTPCTIYMA

Query:  GTPASKKLL
        GTPASKKLL
Subjt:  GTPASKKLL

TrEMBL top hitse value%identityAlignment
A0A0A0L6I7 Uncharacterized protein1.8e-2564.46Show/hide
Query:  MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPSAAA------NISMASGMAL
        MQAV+EKLHDMSV+RKAKAEAKAEEK EKELAKARVEVAHEVRLA+EAEA MDLHVA+AGM AE EMA YA     +FV           ++ +A GM +
Subjt:  MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPSAAA------NISMASGMAL

Query:  DGTPCTIYMAG--TPASKKLL
         G P T+ MAG  +P +KKLL
Subjt:  DGTPCTIYMAG--TPASKKLL

A0A1S3AWI7 uncharacterized protein LOC1034833975.0e-2867.48Show/hide
Query:  MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFV--------PSAAANISMASGM
        MQAVKEKLHDMSV+RKAKAEAKAEEK EKELAKARVEVAHEVRLA+EAEA MDLHVA+AGM AE EMA YA     +FV        P  +AN+ +A GM
Subjt:  MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFV--------PSAAANISMASGM

Query:  ALDGTPCTIYMAG--TPASKKLL
         + G P T+ MAG  +PA+KKLL
Subjt:  ALDGTPCTIYMAG--TPASKKLL

A0A5A7U624 Late embryogenesis abundant protein5.0e-2867.48Show/hide
Query:  MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFV--------PSAAANISMASGM
        MQAVKEKLHDMSV+RKAKAEAKAEEK EKELAKARVEVAHEVRLA+EAEA MDLHVA+AGM AE EMA YA     +FV        P  +AN+ +A GM
Subjt:  MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFV--------PSAAANISMASGM

Query:  ALDGTPCTIYMAG--TPASKKLL
         + G P T+ MAG  +PA+KKLL
Subjt:  ALDGTPCTIYMAG--TPASKKLL

A0A6J1CZ67 late embryogenesis abundant protein 6-like8.8e-2566.09Show/hide
Query:  MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFV-PSAAANISMAS-GMALDGTP
        MQAVK+KLHDMS +RKAKAEAKAEEK EKELAKARVEVAHEVRLA+EAEA MDLHVA+AG  AE EMA YA   PT+FV P    N++ A   + + G P
Subjt:  MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFV-PSAAANISMAS-GMALDGTP

Query:  CTIYMAGTPASKKLL
         T+ M GT   KK+L
Subjt:  CTIYMAGTPASKKLL

A0A6J1ID82 late embryogenesis abundant protein 6-like1.1e-4092.66Show/hide
Query:  MSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPS------AAANISMASGMALDGTPCTIYMA
        MSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMA YA NPPTSFVPS      AAANISMASGMALDGTPCTIYMA
Subjt:  MSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPS------AAANISMASGMALDGTPCTIYMA

Query:  GTPASKKLL
        GTPASKKLL
Subjt:  GTPASKKLL

SwissProt top hitse value%identityAlignment
Q39138 Late embryogenesis abundant protein 62.2e-0445.21Show/hide
Query:  MQAVKEKLHDMSVLRKAK---AEAKAEEKVEKELA--KARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMA
        MQ+ K+K+ DM+   K K    +AKA+EK E+ +A  K   E+AH+ R AKEAEA MD+H+A+A    +  MA
Subjt:  MQAVKEKLHDMSVLRKAK---AEAKAEEKVEKELA--KARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMA

Arabidopsis top hitse value%identityAlignment
AT1G32560.1 Late embryogenesis abundant protein, group 1 protein1.5e-0545.21Show/hide
Query:  MQAVKEKLHDMSVLRKAK---AEAKAEEKVEKELA--KARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMA
        MQ+ K+K+ DM+   K K    +AKA+EK E+ +A  K   E+AH+ R AKEAEA MD+H+A+A    +  MA
Subjt:  MQAVKEKLHDMSVLRKAK---AEAKAEEKVEKELA--KARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGCCGTCAAGGAAAAACTCCACGACATGAGCGTCCTGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGTTGAGAAGGAGCTAGCAAAGGCAAGAGTGGA
GGTGGCTCATGAGGTAAGACTAGCAAAAGAGGCGGAAGCTGAAATGGATCTTCATGTGGCGAGAGCTGGAATGATTGCTGAGAATGAAATGGCTATGTATGCCAAAAATC
CTCCCACTTCCTTTGTACCTTCCGCCGCCGCCAACATTTCCATGGCCTCCGGCATGGCACTGGACGGAACCCCCTGCACCATCTACATGGCCGGAACTCCTGCCTCTAAG
AAGTTACTGTAG
mRNA sequenceShow/hide mRNA sequence
AATGCAAGCCGTCAAGGAAAAACTCCACGACATGAGCGTCCTGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGTTGAGAAGGAGCTAGCAAAGGCAAGAGTGG
AGGTGGCTCATGAGGTAAGACTAGCAAAAGAGGCGGAAGCTGAAATGGATCTTCATGTGGCGAGAGCTGGAATGATTGCTGAGAATGAAATGGCTATGTATGCCAAAAAT
CCTCCCACTTCCTTTGTACCTTCCGCCGCCGCCAACATTTCCATGGCCTCCGGCATGGCACTGGACGGAACCCCCTGCACCATCTACATGGCCGGAACTCCTGCCTCTAA
GAAGTTACTGTAGTTTAATTTTCTTACTCTCAAAAACTAATAATTTTTACTATTTACTGCTTTGTTTCCTTTGTTTTTCCTTCAAGTTTTACCACATCTTGGGATGTTGT
GTAATATTATATACAAATTTAAAATATCATAATAATTATTCAATTTATTATTT
Protein sequenceShow/hide protein sequence
MQAVKEKLHDMSVLRKAKAEAKAEEKVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPSAAANISMASGMALDGTPCTIYMAGTPASK
KLL