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Carg06360 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06360
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCalcium-binding EF hand family protein
Genome locationCarg_Chr06:7599771..7604140
RNA-Seq ExpressionCarg06360
SyntenyCarg06360
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
GO:0048306 - calcium-dependent protein binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597219.1 hypothetical protein SDJN03_10399, partial [Cucurbita argyrosperma subsp. sororia]1.6e-9683.2Show/hide
Query:  MDNLHSGKGRSLYSKFPSEQEKEMRASRSS-------------------FTRRTDFNHGWGLLYEVCDLQSPSLPSSMGQILGRFGGEEWRKKKLKTISD
        MDNLHSGKGRSLYSKFPSEQEKEM   RS                    FTR   FNH        C L      SSMGQILGRFGGEEWRKKKLKTISD
Subjt:  MDNLHSGKGRSLYSKFPSEQEKEMRASRSS-------------------FTRRTDFNHGWGLLYEVCDLQSPSLPSSMGQILGRFGGEEWRKKKLKTISD

Query:  RIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELTSETFKSVSQKLVLTLVIAPTIAV
        RIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELTSETFKSVSQKLVLTLVIAPTIAV
Subjt:  RIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELTSETFKSVSQKLVLTLVIAPTIAV

Query:  FTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK
        FTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK
Subjt:  FTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK

KAG7028690.1 hypothetical protein SDJN02_09871, partial [Cucurbita argyrosperma subsp. argyrosperma]3.5e-120100Show/hide
Query:  MDNLHSGKGRSLYSKFPSEQEKEMRASRSSFTRRTDFNHGWGLLYEVCDLQSPSLPSSMGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFE
        MDNLHSGKGRSLYSKFPSEQEKEMRASRSSFTRRTDFNHGWGLLYEVCDLQSPSLPSSMGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFE
Subjt:  MDNLHSGKGRSLYSKFPSEQEKEMRASRSSFTRRTDFNHGWGLLYEVCDLQSPSLPSSMGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFE

Query:  ELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELTSETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKL
        ELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELTSETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKL
Subjt:  ELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELTSETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKL

Query:  PSSAYASIITLAAVLFQSSQHPLLK
        PSSAYASIITLAAVLFQSSQHPLLK
Subjt:  PSSAYASIITLAAVLFQSSQHPLLK

XP_022950463.1 uncharacterized protein LOC111453554 [Cucurbita moschata]2.4e-84100Show/hide
Query:  MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT
        MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT
Subjt:  MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT

Query:  SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK
        SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK
Subjt:  SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK

XP_022974167.1 uncharacterized protein LOC111472754 [Cucurbita maxima]1.1e-6885.63Show/hide
Query:  MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT
        MGQ+LGRFGG++WR KKLK IS+RIF+KIKK +S +EELSFEELYIATLLVFNDINKL SG+H DPPSREHFKQLI  HD+NKN KID  EFFGFM ELT
Subjt:  MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT

Query:  SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK
        SETFKSVSQKLVLTLVIAPTIAVFTKKRTEG PGVGKLVQKLPSSAYASIITLAAVLFQSS  PLLK
Subjt:  SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK

XP_023540969.1 uncharacterized protein LOC111801195 [Cucurbita pepo subsp. pepo]1.5e-7088.62Show/hide
Query:  MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT
        MGQILGRFGG+EWR KKLKTISDRIF+KIKK +S +EELSFEELYIATLLVFNDINKL SG+H DPPSREHFKQLI  HD NKN KID  EFFGFM ELT
Subjt:  MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT

Query:  SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK
        SETF+SVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQ PLLK
Subjt:  SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK

TrEMBL top hitse value%identityAlignment
A0A0A0L6I0 EF-hand domain-containing protein1.8e-4558.08Show/hide
Query:  MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT
        MGQ   R GG+EWR  +L+ IS++IF++  K     E LSFE+LYIATLLVFNDINK   G H+DPP ++  K+++ + D N+N  ID+ EF  F+++LT
Subjt:  MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT

Query:  SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK
        SE+F SVSQ+L++TLV+APT+AV TKK TEGVPG+GK+VQK+PSSAYA ++TLAA+LFQ+S+  LLK
Subjt:  SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK

A0A6J1EC16 uncharacterized protein LOC1114318341.1e-4559.28Show/hide
Query:  MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT
        M + LGRFGG+EWR ++L+ ISDRIF+ I   K   ++LSFE+LYIATLLV+NDINK    +HLDPP+ E F++LI  +D N++ KI + EF GF+  LT
Subjt:  MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT

Query:  SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK
        S+ F S+S +L+LTLVIAPT+AV TK+ TEG+P +G LVQKLPSSAYA ++TLAA +FQ+SQ P+LK
Subjt:  SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK

A0A6J1GEY5 uncharacterized protein LOC1114535541.2e-84100Show/hide
Query:  MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT
        MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT
Subjt:  MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT

Query:  SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK
        SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK
Subjt:  SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK

A0A6J1IGT6 uncharacterized protein LOC1114727545.2e-6985.63Show/hide
Query:  MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT
        MGQ+LGRFGG++WR KKLK IS+RIF+KIKK +S +EELSFEELYIATLLVFNDINKL SG+H DPPSREHFKQLI  HD+NKN KID  EFFGFM ELT
Subjt:  MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT

Query:  SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK
        SETFKSVSQKLVLTLVIAPTIAVFTKKRTEG PGVGKLVQKLPSSAYASIITLAAVLFQSS  PLLK
Subjt:  SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK

A0A6J1ITL1 uncharacterized protein LOC1114798038.1e-4659.88Show/hide
Query:  MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT
        M + LGRFGG+EWR ++L+ ISDRIF+ I   K   ++LSFE+LYIATLLV+NDINK    +HLDPP+ E F+QL+  +D N++ KI + EF GF+  LT
Subjt:  MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT

Query:  SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK
        S+ F S+S +L+LTLVIAPT+AV TK+ TEG+P VG LVQKLPSSAYA ++TLAA +FQ+SQ P+LK
Subjt:  SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQHPLLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64850.1 Calcium-binding EF hand family protein5.9e-4150Show/hide
Query:  MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT
        MGQ+  +  G+EWR K+++ I DR+F++ K  ++    L+FEELYIA LLV+NDINK   G H DPPS++    ++   D N + ++D+ EF  F+E++T
Subjt:  MGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELT

Query:  SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQS
        +ETF  VSQ L++ L++APT+A+ TKK TEGVPGVGK+VQKLP+S YAS++TLA +   S
Subjt:  SETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQS

AT4G37445.1 BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G64850.1)6.2e-0624.58Show/hide
Query:  SFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELTSETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLV
        +F++ ++A L +FN+ N    G H D P+ +  K   A     K+ +  K  F  FM +    +   +    ++T +++P  A+  K+  E VP + KL+
Subjt:  SFEELYIATLLVFNDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELTSETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLV

Query:  QKLPSSAYASIITLAAVL
        + +P   +   +T+ A++
Subjt:  QKLPSSAYASIITLAAVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAACTTGCATTCCGGGAAAGGAAGGTCGCTTTATTCCAAGTTTCCTTCCGAACAGGAAAAGGAAATGCGGGCATCTCGATCTTCCTTTACTCGAAGAACCGATTT
CAATCACGGTTGGGGGCTGCTTTACGAGGTCTGTGATCTTCAATCGCCGTCGCTGCCGTCTAGTATGGGACAAATCTTGGGGAGATTTGGAGGAGAAGAATGGAGGAAGA
AGAAGTTGAAGACGATATCAGACAGGATATTCGAGAAGATAAAAAAAAACAAATCAGCTGAGGAGGAGCTGTCATTTGAAGAATTATATATTGCCACGTTACTTGTGTTC
AATGATATTAATAAGCTGTTCTCTGGCACACATCTTGATCCGCCTTCAAGGGAACATTTCAAACAACTCATAGCGGTACACGATACAAACAAGAACACAAAAATCGACAA
AGGAGAATTTTTTGGTTTTATGGAGGAGTTGACATCTGAAACGTTCAAATCAGTGAGCCAGAAATTAGTCCTCACTTTGGTGATTGCACCAACGATCGCAGTGTTCACAA
AGAAACGTACTGAAGGAGTTCCAGGCGTTGGAAAACTGGTGCAAAAACTCCCCTCTTCAGCATATGCTTCCATTATCACTCTTGCTGCTGTGCTGTTTCAGAGCTCTCAG
CATCCGCTTCTTAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAACTTGCATTCCGGGAAAGGAAGGTCGCTTTATTCCAAGTTTCCTTCCGAACAGGAAAAGGAAATGCGGGCATCTCGATCTTCCTTTACTCGAAGAACCGATTT
CAATCACGGTTGGGGGCTGCTTTACGAGGTCTGTGATCTTCAATCGCCGTCGCTGCCGTCTAGTATGGGACAAATCTTGGGGAGATTTGGAGGAGAAGAATGGAGGAAGA
AGAAGTTGAAGACGATATCAGACAGGATATTCGAGAAGATAAAAAAAAACAAATCAGCTGAGGAGGAGCTGTCATTTGAAGAATTATATATTGCCACGTTACTTGTGTTC
AATGATATTAATAAGCTGTTCTCTGGCACACATCTTGATCCGCCTTCAAGGGAACATTTCAAACAACTCATAGCGGTACACGATACAAACAAGAACACAAAAATCGACAA
AGGAGAATTTTTTGGTTTTATGGAGGAGTTGACATCTGAAACGTTCAAATCAGTGAGCCAGAAATTAGTCCTCACTTTGGTGATTGCACCAACGATCGCAGTGTTCACAA
AGAAACGTACTGAAGGAGTTCCAGGCGTTGGAAAACTGGTGCAAAAACTCCCCTCTTCAGCATATGCTTCCATTATCACTCTTGCTGCTGTGCTGTTTCAGAGCTCTCAG
CATCCGCTTCTTAAATGATAAGTTGAGACTCCTCTGTTTTCCTTCCTTTGTTCTTTTTTTTTTT
Protein sequenceShow/hide protein sequence
MDNLHSGKGRSLYSKFPSEQEKEMRASRSSFTRRTDFNHGWGLLYEVCDLQSPSLPSSMGQILGRFGGEEWRKKKLKTISDRIFEKIKKNKSAEEELSFEELYIATLLVF
NDINKLFSGTHLDPPSREHFKQLIAVHDTNKNTKIDKGEFFGFMEELTSETFKSVSQKLVLTLVIAPTIAVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQ
HPLLK