; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg06367 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06367
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSWIB domain-containing protein
Genome locationCarg_Chr06:7572761..7575215
RNA-Seq ExpressionCarg06367
SyntenyCarg06367
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597212.1 hypothetical protein SDJN03_10392, partial [Cucurbita argyrosperma subsp. sororia]7.6e-6092.25Show/hide
Query:  MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLN
        MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLN
Subjt:  MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLN

Query:  NLQNPANKREIFCDDKLKAIFEGREKVGF-LEIAKLLTHHFV
        NLQNPANKREIFCDDKLKAIFEGREK     E  KL   HF+
Subjt:  NLQNPANKREIFCDDKLKAIFEGREKVGF-LEIAKLLTHHFV

KAG7028683.1 spp27 [Cucurbita argyrosperma subsp. argyrosperma]1.1e-69100Show/hide
Query:  MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLN
        MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLN
Subjt:  MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLN

Query:  NLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD
        NLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD
Subjt:  NLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD

XP_022950651.1 upstream activation factor subunit UAF30-like [Cucurbita moschata]7.5e-6898.6Show/hide
Query:  MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLN
        MSS FSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDD VSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLN
Subjt:  MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLN

Query:  NLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD
        NLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD
Subjt:  NLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD

XP_022974194.1 protein TRI1-like [Cucurbita maxima]4.7e-6289.93Show/hide
Query:  MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAI------KSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIW
        MSS FSNGIRVFRGC ALLAPSKSSAAVPA+I      KSKEKAPPSSDD VSAAAPKP IKR TTR TGILKVVEVSPALSNFLGVSEVSRTNAVKQIW
Subjt:  MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAI------KSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIW

Query:  SYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD
        SYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAK L+HHFVKD
Subjt:  SYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD

XP_023538991.1 upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo]1.1e-6697.2Show/hide
Query:  MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLN
        MS  FSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDD VSAA PKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLN
Subjt:  MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLN

Query:  NLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD
        NLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD
Subjt:  NLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD

TrEMBL top hitse value%identityAlignment
A0A6J1D0R8 upstream activation factor subunit spp27-like2.0e-5074.84Show/hide
Query:  MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAI------------KSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTN
        MSS  SNGIRVFRGCRALLAPSKSSA+VPAA             +SKEK  PSSD   +AAAPKPKIKR  TR  GILKV +VSPAL NFLGV E SRT+
Subjt:  MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAI------------KSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTN

Query:  AVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD
        AVKQIWSYIKL+NLQNPANKREI+CDDKLKAIFEGREKVGFLEI KLL  HFVK+
Subjt:  AVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD

A0A6J1EDA2 upstream activation factor subunit spp27-like8.5e-4973.38Show/hide
Query:  MSSVFSNGIRVFRGCRALLAPSKSSAAV-PAAIKS----------KEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNA
        MSS FSNGIRVFRGC +LLAP KSSA V P A+KS          KEK PP S D  +AAAPKPK +R  TR TG+LKV +VSPAL NFLGVSE SRT+A
Subjt:  MSSVFSNGIRVFRGCRALLAPSKSSAAV-PAAIKS----------KEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNA

Query:  VKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD
        VKQIWSYIKL+NLQNP+NKREI+CDDKLKAIFEGREKVGFLEI KLLT HFVK+
Subjt:  VKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD

A0A6J1GFF6 upstream activation factor subunit UAF30-like3.7e-6898.6Show/hide
Query:  MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLN
        MSS FSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDD VSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLN
Subjt:  MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLN

Query:  NLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD
        NLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD
Subjt:  NLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD

A0A6J1IKQ4 protein TRI1-like2.3e-6289.93Show/hide
Query:  MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAI------KSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIW
        MSS FSNGIRVFRGC ALLAPSKSSAAVPA+I      KSKEKAPPSSDD VSAAAPKP IKR TTR TGILKVVEVSPALSNFLGVSEVSRTNAVKQIW
Subjt:  MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAI------KSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIW

Query:  SYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD
        SYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAK L+HHFVKD
Subjt:  SYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD

A0A6J1IWB1 protein TRI1-like9.7e-5377.92Show/hide
Query:  MSSVFSNGIRVFRGCRALLAPSKSSAAV-PAAIKS----------KEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNA
        MSS FSNGIRVFRGCRALLAPSKSSA V PAA+KS          KEK PP S D  +AAAPKPK+KR  TRSTG LKV++VSPAL NFLGVSE SRT+A
Subjt:  MSSVFSNGIRVFRGCRALLAPSKSSAAV-PAAIKS----------KEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNA

Query:  VKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD
        VKQIWSYIKL+NLQNPANKREI+CDDKLKAIFEGREKVGFLEI KLLT HFVK+
Subjt:  VKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp274.0e-1151.79Show/hide
Query:  KVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFE
        K +++SP L+ FLG+ ++SR   VK++W YIK ++LQ+P +KR I CDDKLK++FE
Subjt:  KVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFE

Q05024 Protein TRI12.0e-1041.24Show/hide
Query:  GVSAAAPKPKIKRVTTRSTGILKV--VEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHH
        G S +  K K K+  +  +  + V  V +S  L  FLG  E+ RT  VK IW YIK ++LQNP ++REI CD+K++ IF   +K+    + KLLT H
Subjt:  GVSAAAPKPKIKRVTTRSTGILKV--VEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHH

Q08747 Upstream activation factor subunit UAF302.6e-1033.94Show/hide
Query:  SKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIA
        SK  +    +D  +      K K   ++S    + V +S +L++ LG  E++RT  V+++W+YIK +NLQNP NK+EI CD+KL+ I    +     E+ 
Subjt:  SKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIA

Query:  KLLTHHFVK
        K+L  H  +
Subjt:  KLLTHHFVK

Q9FMT4 SWI/SNF complex component SNF12 homolog8.5e-0634.29Show/hide
Query:  EVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHH
        ++S AL + LG+   +R   +  IW Y+K   LQNP +     CD  L+ +F G EK+ F  +++ ++HH
Subjt:  EVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHH

Q9P7S3 SWI/SNF and RSC complexes subunit ssr33.2e-0537.31Show/hide
Query:  EVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLL
        ++S A +N LG+ E +R + V  +W YIK + LQ+   KR I CD  L+ +FE  +++ F  I +L+
Subjt:  EVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLL

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein1.1e-2155.29Show/hide
Query:  VTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVK
        V     GI K   VS  L++F G  E++R +A+K++W Y+KL+NLQNPANK+EI CDDKLK IF+G++KVG  EI KLL+ HF K
Subjt:  VTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVK

AT2G14880.1 SWIB/MDM2 domain superfamily protein2.8e-2045.69Show/hide
Query:  AAVPAAIKSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGRE
        A+ PAA     +A  S+ +     A   ++ R      GI+K   VSP + + + + E++RT A+K+IW+YIK ++LQ+P NKREI CD+KLK IFEGR+
Subjt:  AAVPAAIKSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCDDKLKAIFEGRE

Query:  KVGFLEIAKLLTHHFV
        +VGFLEIAKL+  HF+
Subjt:  KVGFLEIAKLLTHHFV

AT2G35605.1 SWIB/MDM2 domain superfamily protein1.4e-2749.62Show/hide
Query:  RVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKR
        RVF  CR L+A + SS                               +   + TGILKVV VS  L+NF+G +EVSRT AVK+IW YIKLNNLQNP NKR
Subjt:  RVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKR

Query:  EIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVK
        EI CD++LK IF G++ VGFLEI+KLL+ HF K
Subjt:  EIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVK

AT3G03590.1 SWIB/MDM2 domain superfamily protein1.1e-3255.7Show/hide
Query:  MSSVFSNGIRVFRGCRALLAPSK--SSAAVPAAIKSKEKAPPSSDDGVSAAAPKPKIK-----RVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQI
        MSSV      VFRG R+LLAP+   +S+ V A    K  A P      + A PKPK K     + T RSTGI KV  VSP L+ FLG  E SRT+A+K I
Subjt:  MSSVFSNGIRVFRGCRALLAPSK--SSAAVPAAIKSKEKAPPSSDDGVSAAAPKPKIK-----RVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQI

Query:  WSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVK
        W+YIK ++LQNPA+KREIFCD+ LK IFEG++KVGFLEI+KLL+ HFVK
Subjt:  WSYIKLNNLQNPANKREIFCDDKLKAIFEGREKVGFLEIAKLLTHHFVK

AT4G34290.1 SWIB/MDM2 domain superfamily protein6.7e-2244.09Show/hide
Query:  APSKSSAAVPAAIKSKEKAPPS-----SDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCD
        AP +SS   P++++     P +     +    +AA+  P     T    GI+K   VS A+ + +GV E+ RT A+K+IW+YIK ++LQ+P NKR+I CD
Subjt:  APSKSSAAVPAAIKSKEKAPPS-----SDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKREIFCD

Query:  DKLKAIFEGREKVGFLEIAKLLTHHFV
        +KLK IFEG+E+VGFLEIAKL+  HF+
Subjt:  DKLKAIFEGREKVGFLEIAKLLTHHFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCTGTATTCAGCAATGGCATTAGGGTTTTCAGAGGCTGTAGAGCTCTATTAGCTCCGTCGAAATCATCGGCTGCCGTTCCCGCCGCCATCAAATCGAAGGAGAA
GGCTCCTCCGAGCTCCGATGATGGTGTTTCTGCAGCCGCGCCCAAGCCGAAAATCAAAAGGGTAACGACTCGATCGACGGGGATTCTCAAGGTCGTCGAGGTTTCTCCAG
CGTTGAGCAACTTCTTAGGTGTATCGGAGGTTTCTCGCACCAACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCAACAACCTTCAGAATCCTGCTAACAAAAGAGAG
ATCTTCTGCGACGATAAGCTTAAAGCCATATTCGAAGGAAGGGAAAAGGTCGGTTTCCTCGAGATCGCGAAATTGCTCACTCACCATTTTGTGAAGGACTGA
mRNA sequenceShow/hide mRNA sequence
AAATCTCTGTAGAAATTGATCAATTTGATTTTGTCTAATATCTTGCTGCCAGTGGAACTAAAGAATCGGCGAGTTTCTCTTAAACCTCCGCCGGGAATCGACTGCAACAT
CCAAGCAAGCTACAATGTCGTCTGTATTCAGCAATGGCATTAGGGTTTTCAGAGGCTGTAGAGCTCTATTAGCTCCGTCGAAATCATCGGCTGCCGTTCCCGCCGCCATC
AAATCGAAGGAGAAGGCTCCTCCGAGCTCCGATGATGGTGTTTCTGCAGCCGCGCCCAAGCCGAAAATCAAAAGGGTAACGACTCGATCGACGGGGATTCTCAAGGTCGT
CGAGGTTTCTCCAGCGTTGAGCAACTTCTTAGGTGTATCGGAGGTTTCTCGCACCAACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCAACAACCTTCAGAATCCTG
CTAACAAAAGAGAGATCTTCTGCGACGATAAGCTTAAAGCCATATTCGAAGGAAGGGAAAAGGTCGGTTTCCTCGAGATCGCGAAATTGCTCACTCACCATTTTGTGAAG
GACTGATCAGTACAGAAGATGAGAGATCAACTTCCAGACCATTTTGTGGCTCTTTATCTTGCAGCCTCAACTCTTATAGTTTTG
Protein sequenceShow/hide protein sequence
MSSVFSNGIRVFRGCRALLAPSKSSAAVPAAIKSKEKAPPSSDDGVSAAAPKPKIKRVTTRSTGILKVVEVSPALSNFLGVSEVSRTNAVKQIWSYIKLNNLQNPANKRE
IFCDDKLKAIFEGREKVGFLEIAKLLTHHFVKD