CuGenDBv2

Gene ID	Carg06422
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosomal protein L34
Genome location	Carg_Chr14:9696521..9701234
RNA-Seq Expression	Carg06422
Synteny	Carg06422
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000271 - Ribosomal protein L34 IPR020939 - Ribosomal protein L34, conserved site

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6581832.1 hypothetical protein SDJN03_21834, partial [Cucurbita argyrosperma subsp. sororia]

2.3e-63

98.4

Show/hide

Query:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM
        MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDG+TSSTQEPM
Subjt:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARE
        LLFPKRTFQPSTIRRKRNHGFFAR+
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARE

KAG7018271.1 hypothetical protein SDJN02_20139, partial [Cucurbita argyrosperma subsp. argyrosperma]

9.8e-70

100

Show/hide

Query:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM
        MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM
Subjt:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFAREKHGNFIDE
        LLFPKRTFQPSTIRRKRNHGFFAREKHGNFIDE
Subjt:  LLFPKRTFQPSTIRRKRNHGFFAREKHGNFIDE

XP_022955351.1 uncharacterized protein LOC111457406 isoform X1 [Cucurbita moschata]

8.0e-64

100

Show/hide

Query:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM
        MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM
Subjt:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFAR
        LLFPKRTFQPSTIRRKRNHGFFAR
Subjt:  LLFPKRTFQPSTIRRKRNHGFFAR

XP_022955352.1 uncharacterized protein LOC111457406 isoform X2 [Cucurbita moschata]

6.1e-64

99.2

Show/hide

Query:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM
        MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM
Subjt:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARE
        LLFPKRTFQPSTIRRKRNHGFFAR+
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARE

XP_023526192.1 uncharacterized protein LOC111789743 isoform X2 [Cucurbita pepo subsp. pepo]

3.0e-63

98.4

Show/hide

Query:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM
        MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQ AHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM
Subjt:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARE
        LLFPKRTFQPSTIRRKRNHGFFAR+
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIB6 Uncharacterized protein

4.6e-57

90.4

Show/hide

Query:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM
        MASKLLIRTG+SLMNRLRLSS HQNN IW SQ+LS GHGV+VTPMLFPSVSKHQTAH LQQNDTESLR+L+SEGIFFPFGLPSLRFFLPDGD SSTQEPM
Subjt:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARE
        LLFPKRTFQPSTIRRKRNHGFFAR+
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARE

A0A6J1GTJ1 uncharacterized protein LOC111457406 isoform X1

3.9e-64

100

Show/hide

Query:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM
        MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM
Subjt:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFAR
        LLFPKRTFQPSTIRRKRNHGFFAR
Subjt:  LLFPKRTFQPSTIRRKRNHGFFAR

A0A6J1GTQ0 uncharacterized protein LOC111457406 isoform X2

3.0e-64

99.2

Show/hide

Query:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM
        MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM
Subjt:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARE
        LLFPKRTFQPSTIRRKRNHGFFAR+
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARE

A0A6J1IS44 uncharacterized protein LOC111480019 isoform X1

7.3e-63

99.19

Show/hide

Query:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM
        MASKLLIRTGNSLMNRLRLSST QNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM
Subjt:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFAR
        LLFPKRTFQPSTIRRKRNHGFFAR
Subjt:  LLFPKRTFQPSTIRRKRNHGFFAR

A0A6J1IXD9 uncharacterized protein LOC111480019 isoform X2

5.6e-63

98.4

Show/hide

Query:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM
        MASKLLIRTGNSLMNRLRLSST QNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM
Subjt:  MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPM

Query:  LLFPKRTFQPSTIRRKRNHGFFARE
        LLFPKRTFQPSTIRRKRNHGFFAR+
Subjt:  LLFPKRTFQPSTIRRKRNHGFFARE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G13882.1 Ribosomal protein L34

2.6e-28

55.47

Show/hide

Query:  MASKLLIRTGNSLMNRLRLSSTH---QNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQ
        MA+K LIR+G SLMNR     T    QNN   S Q ++   G ++ P  FPS+S  Q++   + NDT SL++L   G  +P GLPSL FFLP+ D SS  
Subjt:  MASKLLIRTGNSLMNRLRLSSTH---QNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQ

Query:  EPMLLFPKRTFQPSTIRRKRNHGFFARE
        EP+LLFPKRTFQPSTIRRKRNHGFFAR+
Subjt:  EPMLLFPKRTFQPSTIRRKRNHGFFARE

AT3G13882.2 Ribosomal protein L34

5.4e-18

39.19

Show/hide

Query:  HQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLP--------DGDTSS-------------------
        +QNN   S Q ++   G ++ P  FPS+S  Q++   + NDT SL++L   G  +P GLPSL FFLP        D   SS                   
Subjt:  HQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLP--------DGDTSS-------------------

Query:  ------------------TQEPMLLFPKRTFQPSTIRRKRNHGFFARE
                          + EP+LLFPKRTFQPSTIRRKRNHGFFAR+
Subjt:  ------------------TQEPMLLFPKRTFQPSTIRRKRNHGFFARE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGTCCAAACTTCTGATTCGGACGGGAAATTCTTTGATGAATCGATTGCGATTAAGTTCGACGCATCAGAATAACTGGATTTGGAGTAGCCAATCTCTGTCCCAGGG
CCATGGTGTTGATGTCACTCCGATGCTATTTCCTTCGGTCTCTAAGCATCAGACTGCTCACCATTTGCAGCAGAATGATACCGAATCATTGAGAAAGCTCGAATCAGAAG
GCATTTTCTTCCCTTTCGGTCTTCCGTCGCTCCGGTTCTTCTTGCCCGACGGAGATACTTCTTCGACTCAAGAACCAATGCTCTTATTTCCTAAAAGGACTTTTCAGCCT
AGCACCATCAGGCGAAAAAGGAATCATGGATTCTTTGCCCGGGAGAAGCATGGGAATTTCATTGATGAATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MASKLLIRTGNSLMNRLRLSSTHQNNWIWSSQSLSQGHGVDVTPMLFPSVSKHQTAHHLQQNDTESLRKLESEGIFFPFGLPSLRFFLPDGDTSSTQEPMLLFPKRTFQP
STIRRKRNHGFFAREKHGNFIDE

Carg06422 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome